Query= MSMg01no266_g11.b1 MSMg01no266_g11.b1 CHROMAT_FILE:
MSMg01no266_g11.b1 PHD_FILE: MSMg01no266_g11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:04:11 2005
(663 letters)
>mm_chr13_58024117_58025179
Length = 1063
Score = 1237 bits (640), Expect = 0.0
Identities = 659/674 (97%), Gaps = 14/674 (2%)
Strand = Plus / Minus
Query: 4 ggaattcatcttgtgccgcacctgggggcggggggcaggggggagaagctggtcgtcatt 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 ggaattcatcttgtgccgcacctgggggcggggggcaggggggagaagctggtcgtcatt 646
Query: 64 tctaaatgcagtcaaattccaattatccatgataatagaagacctcagcatacggaggct 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 tctaaatgcagtcaaattccaattatccatgataatagaagacctcagcatacggaggct 586
Query: 124 ctaaatacagttttagtttggcttaaggggcggccatgatttgtttattttcccacctga 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 ctaaatacagttttagtttggcttaaggggcggccatgatttgtttattttcccacctga 526
Query: 184 gttatttgtcttgctcggcttacggacctctaaaggcactcggagttattcggggcgggc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 gttatttgtcttgctcggcttacggacctctaaaggcactcggagttattcggggcgggc 466
Query: 244 actgtctttctgtctcctcctccttggttttcaggatgtgaagtgtattttacttcattt 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 actgtctttctgtctcctcctccttggttttcaggatgtgaagtgtattttacttcattt 406
Query: 304 ctggattttaaaaaccattaactttgaacttgcaaaacgcaggagcagaggatctcccta 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 ctggattttaaaaaccattaactttgaacttgcaaaacgcaggagcagaggatctcccta 346
Query: 364 cctgccatgccgagttcactttaatgctaccttcataggtaacggtagatggaccaacat 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 cctgccatgccgagttcactttaatgctaccttcataggtaacggtagatggaccaacat 286
Query: 424 tcatacagtatcaaggctatgcaatctcaggagtttctctctgtttccatatccgccagt 483
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 285 tcatacagtatcaaggctatgcaatctccggagtttctctctgtttccatatccgccagt 226
Query: 484 tgctgtctacctgtagtgcttg--------------ctctctctctctctctctctctct 529
|||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 225 tgctgtctacctgtagtgcttgctctctctctctctctctctctctctctctctctctct 166
Query: 530 ctccccaccctctcccaccctctcagatatatatcccattgtagatggttgtgagccacc 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 ctccccaccctctcccaccctctcagatatatatcccattgtagatggttgtgagccacc 106
Query: 590 atggttgctgggaattgaactcaggacctcaggaagagcagtcagtgctcttaacctctg 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105 atggttgctgggaattgaactcaggacctcaggaagagcagtcagtgctcttaacctctg 46
Query: 650 agccatctctccag 663
||||||||||||||
Sbjct: 45 agccatctctccag 32
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 50
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1063
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1053
Effective search space: 687609
Effective search space used: 687609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no266_g11.g1 MSMg01no266_g11.g1 CHROMAT_FILE:
MSMg01no266_g11.g1 PHD_FILE: MSMg01no266_g11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:04:11 2005
(284 letters)
>mm_chr13_57847039_57847724
Length = 686
Score = 470 bits (243), Expect = e-137
Identities = 271/281 (96%), Gaps = 2/281 (0%)
Strand = Plus / Plus
Query: 4 cgccatgcatttgtcaggaagcctgaaaggcttcagataggctgcagagagcaagaggct 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 cgccatgcatttgtcaggaagcctgaaaggcttcagataggctgcagagagcaagaggct 263
Query: 64 acaaacacccaaagactgatccagtataccccactcactcacttggaaagttacactacg 123
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 264 acaaacacccaaagactgatccaatataccccactcactcacttggaaagttacactacg 323
Query: 124 tactaatggaaagcacctccctagaaaaggtttaagaagagtccaggatagctagctgga 183
||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 324 tacccatggaaaacacctccctagaaaaggtttaagacgagtccaggatagctagctgga 383
Query: 184 cacaggagaaggtctgatggaagagatgcacagagaccaacgaggcggcct--ttttttt 241
||||||||||||||||||||||| |||||||||||||||| |||||||||| |||||||
Sbjct: 384 cacaggagaaggtctgatggaagggatgcacagagaccaatgaggcggcctctttttttt 443
Query: 242 ttcttctaaatgtgcgggttcgaagaggaagctactgaact 282
||||||||||||||||||||| |||||||||||||||||||
Sbjct: 444 ttcttctaaatgtgcgggttcaaagaggaagctactgaact 484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 686
Length adjustment: 9
Effective length of query: 275
Effective length of database: 677
Effective search space: 186175
Effective search space used: 186175
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
