BAC Information

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BAC

Clone NameMSMg01-266J13
Chromosome13 (Build37)
Map Location 95,756,605 - 95,756,871
singlet/doubletsinglet
Overlap geneWdr41
Upstream geneCycs-ps3, Lhfpl2, Scamp1, LOC435378, ENSMUSG00000042857, Ap3b1, Tbca, Otp
Downstream genePde8b, Zbed3, Aggf1, Crhbp, S100z, F2rl1, F2r, Iqgap2, F2rl2, Sv2c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-266J13.T7 (MSMg01no266_j13.b1)MSMg01-266J13.TJ (MSMg01no266_j13.g1)
ACCAG407538AG407539
length744744
length of high quality
(start - end)		318 (46 - 363)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no266_j13.b1 PHD_FILE: MSMg01no266_j13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:04:25 2005CHROMAT_FILE: MSMg01no266_j13.g1 PHD_FILE: MSMg01no266_j13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:04:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATTTTCCATAATCAAGGAAAAAGTAGTCTATGTTCAGGTAAAGCT
AGTGAAACATCAGTGACATCTTCCCTCTGCCCCTGGGAAGTGTGCTGACC
TTCCTGTCTCAGTCTCCACCCTCTGCTCCTGGGAAGTGTGCTGACCTGCC
TGTCTCAGTCTCCACCCTCTGCCCCTGGGAAGTGTGCTGACGTCCCTGTC
TCAGTCTCCTACAGGTGCCTGTCTATGTGAGCCCCTCAAGTAGTTCCAGC
ATACACACACCACTTGGAAATATGAATTATGTGATTTTTAGCTTTGTTTC
CTAGGTGTTGTATATTTATGCCTCCCGCTCCCTTCTATTTCCCATACTTT
AGAAAGAGCTTTATCCCACCACTGGTTTCTATATTTCCACAACTGTTATC
TTGGTCTTCCCACCCCTTACAGTTATACAGATGCTGAACATGGGAAGATT
CACCCTTAGGCTTAGGGATTCCCTTTTGGCTATGTCCTTTTTTGATTTGC
AGGACTTGGCTTACTTGAAATGGTGTCACATGAGCAATGACTATCAAATG
GACATTTAGGTAGTGGACACAGACCTTATTTGTGAACCACTTTGTTTTGT
TCAGTCTTTGTATAGCTCTGCTGTACCTTTAGCATGCAGTTGGCAAGAAT
AAGTATGTTTTCTGAGATGCTCATAGCGCACGCGTTATAGCGAG

CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCATGGCAAAAATACTGAACCTTT
TGCTGTGTCCCACAGGTCCCCAAGCATCTGTTCCTTCTTATTTGGTCTTT
TCTCTCTGTTGCTCAGATGGGATGGTGGCTCAGGTGCTTCTTCAAGCTCA
CTGATACGTTCATCTCCATTTTAACCTTGAATCTTTCCAGGTATGCTGTG
GACCTAAAATGTCCATGTGGTGGTTTGAAAGAAACTGTCCTGTATAGGCC
CATAGGGAGTGACACTATTAGGAGGTGTGGCTTTGTTGGGAGAAGTGTGT
CACTTGAGGATGTTGCTTTTTGCCCCCCCCGCTCAAGCCACATCTACTGT
TGTCTTCTGGTTGCCTGCCCACCTGGATGTAGAACTCTTATCTCCTTCTC
CAGCACCATGCCTGCCTGGATACTGTTGTGTTTCCCACCATGATGACAAT
GGACTGAAACTCTGAAACTGTAAGCCAACCCCAATGAGATGGTTCTTTTT
ATAAGTTGCCATGGTCATGGTGTCTCTTCAGAGCAATGAAACCCTAACTA
ACACAGTTCACTTGGTTTCCTATATATACTCTATTTTTGTGCTTAAACTT
TGTATTTTCCCATTTATTTCACGTGCCAGTTCTTACTCAATGGACATTTT
TGTGATAGTTACTTCAATGTCTTTGTCAGATAATTCCAGCGTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no266_j13.b1 MSMg01no266_j13.b1 CHROMAT_FILE:
MSMg01no266_j13.b1 PHD_FILE: MSMg01no266_j13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:04:25 2005
         (318 letters)



>mm_chr13_95756401_95757118
          Length = 718

 Score =  416 bits (215), Expect = e-120
 Identities = 266/313 (84%), Gaps = 46/313 (14%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattttccataatcaaggaaaaagtagtctatgttcaggtaaagctagtgaaaca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattttccataatcaaggaaaaagtagtctatgttcaggtaaagctagtgaaaca 264

                                                                       
Query: 65  tcagtgacatcttccctctgcccctgggaagtgtgctgaccttcctgtctcagtctccac 124
           |||||||||||||||||||||||||||||||||||||||||||                 
Sbjct: 265 tcagtgacatcttccctctgcccctgggaagtgtgctgacctt----------------- 307

                                                                       
Query: 125 cctctgctcctgggaagtgtgctgacctgcctgtctcagtctccaccctctgcccctggg 184
                                        |||||||||||||||||||||||||||||||
Sbjct: 308 -----------------------------cctgtctcagtctccaccctctgcccctggg 338

                                                                       
Query: 185 aagtgtgctgacgtccctgtctcagtctcctacaggtgcctgtctatgtgagcccctcaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 aagtgtgctgacgtccctgtctcagtctcctacaggtgcctgtctatgtgagcccctcaa 398

                                                                       
Query: 245 gtagttccagcatacacacaccacttggaaatatgaattatgtgatttttagctttgttt 304
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 gtagttccagcatacgcacaccacttggaaatatgaattatgtgatttttagctttgttt 458

                        
Query: 305 cctaggtgttgta 317
           |||||||||||||
Sbjct: 459 cctaggtgttgta 471


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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