BAC Information

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BAC

Clone NameMSMg01-268D16
Chromosome13 (Build37)
Map Location 29,706,961 - 29,707,248
singlet/doubletsinglet
Overlap geneCdkal1
Upstream geneLOC626683, 2610307P16Rik, Sox4, LOC100041135
Downstream geneE2f3, Mboat1, Agtr1a, Uqcrfs1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-268D16.T7 (MSMg01no268_d16.b1)MSMg01-268D16.TJ (MSMg01no268_d16.g1)
ACCAG408728AG408729
length735735
length of high quality
(start - end)
302 (434 - 735)288 (75 - 362)
definitionCHROMAT_FILE: MSMg01no268_d16.b1 PHD_FILE: MSMg01no268_d16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:06:28 2005CHROMAT_FILE: MSMg01no268_d16.g1 PHD_FILE: MSMg01no268_d16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:06:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAATTGAAGAATCTTGAATGGCAGAGAAGCACTTAAAGAAATGTT
TAAAGCCCTTAGTGAACATTGAAACGCAAATCAAGATGACCCTGAGATTT
CACCTTACACCAATTAGTATGGCTAAGATCAAAAACTCAGGTGACAGCAC
ATGTTGGCTAGGATGTGGAGAAAGAGGAACACTCTTCCACTGCTGGTGGG
ATTGAAAGCTGGCATAACCACTCTGGAAATCAATCTGGAGGTTCCTCAGA
AAATTGGAAGTAGATTTACCTGAAGACCCAGCTATACCACTCTTAGGCAT
ATACCCAAAAGATGTCTTACCATACCATACGGGCACATCCTCCACTATAT
TCATAATGACCTTATTTGTAATACTCAGAAACTGGAAATAATCCAGATGT
CCGACAAACAAAGAATGGATACAGAAAATGTGGCTCATTTACATAATGGA
ATACTATTCAGCTATTAAGAATGAAGACATCATGAGTTTTGCAGCAAATG
GATGGAACTAGAAAATATCATCCTGAGTATGGTAACTCAAACTCAACAGG
ACACGCATGGTATGTACTCACTGATAAGGGGCTATAGCCTCCCCCCACCC
CGCCCCAAAAGTACAAAATACCTAGGATACAATCCACAGAACTCAAGAAG
GTTAACAAGGATAAGGGCCCAAGTAAGGATGCCTC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTCTCTGTGGTGACAGAGCTT
GCTAAACGTAGAGTGCTCTACTTCTGCCTCCCACTTGGCCACCTTGGCGG
TGAGGACTGCCTGGGGCTCACTTCTCCCCATGTTTCAATTAATGTTCAGT
AATGTGATTTGAATGAGTGCACGTTGTGTGCCGTGATGATTCTCATAATT
AGATAGGAAGCCTTAGCAGCCTGTGTAGGCAATGTTCTCAGAAGGAACCT
TACACATGTCTGGATCCACAAGTTGGAAGGAATCGCCACCCTAGCACCCA
TGATTGGTAAAGATTTTATGCATTGCTCACACATCGTGAAGTCATTTGGG
AGAACAAAATAGATTGGGCACATGTGAATGTTACATAAACAATAGCAAGC
TAGGGAATATTTGAAACAAAGACAATCTTTTACATAGGAATTGTTGAGGA
AAATAATTTAAGAAGAAGAGATCAGTTTTCTTTGGGGAAAAATGGGGTTG
ATATAAACTTTACCATGTGAATTCATTTCCATTTTTATATCTGTATTTGT
TCACTGCAGTAACATCTGGGCTTTATTTTTCAGACTTGAAATAACTTACA
TTCGATGGTCTGACCTTTAGTTATGATTGCACTGACTTTCAGATGTAATT
CACTATGTAATTAGTTTATGTAAAAAAGAGGGGGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no268_d16.g1 MSMg01no268_d16.g1 CHROMAT_FILE:
MSMg01no268_d16.g1 PHD_FILE: MSMg01no268_d16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:06:28 2005
         (288 letters)



>mm_chr13_29706761_29707448
          Length = 688

 Score =  534 bits (276), Expect = e-156
 Identities = 285/288 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttgtttctctgtggtgacagagcttgctaaacgtagagtgctctacttctgcctcccac 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 488 tttgtttctctgtggtgacagagcttgctaaacgtagagtgctctacttctgtctcccac 429

                                                                       
Query: 61  ttggccaccttggcggtgaggactgcctggggctcacttctccccatgtttcaattaatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 ttggccaccttggcggtgaggactgcctggggctcacttctccccatgtttcaattaatg 369

                                                                       
Query: 121 ttcagtaatgtgatttgaatgagtgcacgttgtgtgccgtgatgattctcataattagat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ttcagtaatgtgatttgaatgagtgcacgttgtgtgccgtgatgattctcataattagat 309

                                                                       
Query: 181 aggaagccttagcagcctgtgtaggcaatgttctcagaaggaaccttacacatgtctgga 240
           ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct: 308 aggaagccttagcagcctgtgtagggaatgctctcagaaggaaccttacacatgtctgga 249

                                                           
Query: 241 tccacaagttggaaggaatcgccaccctagcacccatgattggtaaag 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tccacaagttggaaggaatcgccaccctagcacccatgattggtaaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)