BAC Information

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BAC

Clone NameMSMg01-268K08
Chromosome13 (Build37)
Map Location 48,003,086 - 48,003,363
singlet/doubletsinglet
Overlap genenone
Upstream geneKif13a, LOC544928, Nhlrc1, Tpmt, Aof1, Dek, LOC100039761, Ibrdc2
Downstream gene4931429P17Rik, Id4, LOC667351, Zfp169, A830005F24Rik, AW456874, Barx1, Phf2, EG667415, BC010304
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-268K08.T7 (MSMg01no268_k08.b1)MSMg01-268K08.TJ (MSMg01no268_k08.g1)
ACCAG409000AG409001
length720718
length of high quality
(start - end)
319 (46 - 364)280 (75 - 354)
definitionCHROMAT_FILE: MSMg01no268_k08.b1 PHD_FILE: MSMg01no268_k08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:06:58 2005CHROMAT_FILE: MSMg01no268_k08.g1 PHD_FILE: MSMg01no268_k08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:06:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTT
TCTGAAGTCCACCTTCTTGAGTTCCTTATATATGTTGGATATTAGTCCCC
TATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTC
TTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCAT
TAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTC
TGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACT
TTCTCCTCTATAATTTCAGTGTNTNTGCCTTTCCGTGAAGTTCTTTGATC
CATTTAGATTTGACCTTGTACAAGGAAAAAGTAAGAATCGATTCGCAGTC
TTCTACATGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGCTG
TCTTTCTTCCAGTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGACC
ATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTCTA
CTTGTCTGTCTCTATACCAGTACCATGCAGTTTTTACCACCATTGCTCTG
TAGTAAAGCTTTAGGTCAGGCATGGTGATTCCACCAGAGGTTCTTTTATC
CTTGAGAAGAGTTTTTGCTA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTCCTCTTCAGCCATCTACCCAGGTG
GCCTGAAGAACAATGAGAGCATGAAGATATTTTTAGGATGTTGCTAAATG
CATCCCTCAAGAAAACATGATTCAGGCCTGTGATATCACCAGGCTATGCA
CTAGGCCAGGGAACACCCATGGCTTTGGGTGACATGTTAGACACAAATGA
CTAAGCCTAAACTTGAGAACTGGGCTGGCTGGGTGGAAAACATTCCCATA
AACCTATTCAAGTGTGTCCTGTATTGTCTGACATTACGTCCTTCATGAGG
AACAACCGGTAAGGTGNATTCCTGGAACAAGNCCCAAAATCCTTCACAGA
TTGGACTGAAATATAAGCAGAACACAAACAAAAAAAAACTTGGATTTAGG
ATGACCGGGTANAAATATTTTGAGAAAATGGAGGGTAAAGATCTTGATGC
CATCTTCAATATGGGCCTACGGGTTGCAGTCACTGTTCCCCCCAAACACC
AGCCAATCTAGTGATACTAGTAAATATTATTTTTAAATGAAATAAAGGGG
CTGGAGAGATGGCTCAGGTGTTATGAGCATGTACAGTTGTTGTAGAATAC
CTGAGTTCTATTCTCAGCCCCATCTCCGGCGGAATCTGCCTCTTGCCTCT
GAGGACACCTGCCACCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no268_k08.g1 MSMg01no268_k08.g1 CHROMAT_FILE:
MSMg01no268_k08.g1 PHD_FILE: MSMg01no268_k08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:06:58 2005
         (280 letters)



>mm_chr13_48002886_48003565
          Length = 680

 Score =  514 bits (266), Expect = e-150
 Identities = 275/278 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcctcttcagccatctacccaggtggcctgaagaacaatgagagcatgaagatattttt 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 201 ttcctcttcagccatctacccaggtggcctgaagaacaatgagaacatgaagatattttt 260

                                                                       
Query: 61  aggatgttgctaaatgcatccctcaagaaaacatgattcaggcctgtgatatcaccaggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggatgttgctaaatgcatccctcaagaaaacatgattcaggcctgtgatatcaccaggc 320

                                                                       
Query: 121 tatgcactaggccagggaacacccatggctttgggtgacatgttagacacaaatgactaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatgcactaggccagggaacacccatggctttgggtgacatgttagacacaaatgactaa 380

                                                                       
Query: 181 gcctaaacttgagaactgggctggctgggtggaaaacattcccataaacctattcaagtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcctaaacttgagaactgggctggctgggtggaaaacattcccataaacctattcaagtg 440

                                                 
Query: 241 tgtcctgtattgtctgacattacgtccttcatgaggaa 278
           |||||| || ||||||||||||||||||||||||||||
Sbjct: 441 tgtcctatactgtctgacattacgtccttcatgaggaa 478


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 680
Length adjustment: 9
Effective length of query: 271
Effective length of database: 671
Effective search space:   181841
Effective search space used:   181841
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)