BAC Information

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BAC

Clone NameMSMg01-268L14
Chromosome13 (Build37)
Map Location 118,741,362 - 118,741,674
singlet/doubletsinglet
Overlap geneHcn1
Upstream geneParp8, LOC668288, LOC623312, Emb, EG623365, LOC382807
Downstream geneLOC100041695, LOC674926, Mrps30, LOC668309, LOC100041278, Fgf10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-268L14.T7 (MSMg01no268_l14.b1)MSMg01-268L14.TJ (MSMg01no268_l14.g1)
ACCAG409055AG409056
length731773
length of high quality
(start - end)
330 (46 - 375)222 (77 - 298)
definitionCHROMAT_FILE: MSMg01no268_l14.b1 PHD_FILE: MSMg01no268_l14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:07:03 2005CHROMAT_FILE: MSMg01no268_l14.g1 PHD_FILE: MSMg01no268_l14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:07:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACCTTGTTTCCCTTAGCAAAGTGATTCATATTAAGAACTTTCTTC
CAAGGTAGGTCTAGAAAACTTTCCCAAACCATGTTATTCTCTTATGTAAA
TGTTTCATGATGAAGTATAAATTTCTACCATGTAGCGGAAATTGTGTTTT
TCTGGGTAGATAGAAGTAGAGCCATTCTTTCATGAATGCTCATTTTAATA
GGCTAATTCACAACTGAACACTAGAATGTATGAGAACTCGAGATCTTGCT
AAGACTGGTGAATACTGTACAGATGAGCTATAGGTTTGATCTTTCTGAGC
AGAGAAACAACTTTTTTTTTGTGCCACACACCTCATTTCCTCCTAGCTAA
TTAAAATATGCCAGGTAGCACCATGTAGTCACTATCTCAATCAATTTGAC
AAAGACTACATTCACCTAGAAATATAATCTCAGTTTGGTTCCTAGAAATG
CCTGTGGAGATTGCCTTGATAAGCTCATTGACATGAAAATGGTCAACCTA
ACAAGGGCCAACATGAGTCCTTTGTTTGAGGACCCAGACTGTATAGAACA
ACATAGGGTGAGCTGCATACAGGTCTGCATGAATGAGTTCTCTTTCTCTT
CTTGGATGTTGATGTGAGTAGCTGCTGCAAGGTTTTGCCTTTGCATTCCT
TAGTGATAGGCTATCACCTGGAGCTGTGAGC
ACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGTTCTGAGCCCCATTT
TTTAATGGGGTTATTCGATTTTCTGAAGTCCACCTTAGTACCCCGGAGCT
CTTGACTCTAGCTGCATATGTATCAAAAGATGGCCTAGTCGGCCATCACT
GGAAAGAGAGGCCCATTGGACACTCAAACTTTATATGCCCCAGTACAGGG
GAACGCCAGGGCCAAAAAGGGGGAATGGGTGGGTAGGGGAGTGGGGGTNN
NNNNNNNNNNNNNNNNNNNTTTTTTTTTTTNTTNTNNNTTTTTTTTTTNN
NNNNNNNTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCCNNNNNNNNNTN
NNNNNNNNNNNNNNNNNNNNNNNCCCCCCAAAAAAAAAAAAACAACCCGC
GGGGGGGGGGCGGCCCCACCNCANCACCCACACCCCCCCAAACAGACCCC
CCAACACAAGACCCCCGCCAAAACACCCCCGACACCCACGCCCCCCCGCG
AGCGCCCCCAGAAGCCCACCCCGCACCACCAGTCGGCCCCCACGAAGCCC
AGACCCAACCTACGGTTCTACTTTCTTTTTTTCCTAGTATCTTATTTTCG
CATAATTTTTCGGAATTTCCTGATTTTATTCTCTCTTTTTTTTATTCCTG
TTACCTTTTCTACCACTTTTCTTACCTGTTTCTTTTTCACTATCATTTTT
TCCTTCCCCACCCTCTTTATCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no268_l14.b1 MSMg01no268_l14.b1 CHROMAT_FILE:
MSMg01no268_l14.b1 PHD_FILE: MSMg01no268_l14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:07:03 2005
         (330 letters)



>mm_chr13_118741158_118741887
          Length = 730

 Score =  605 bits (313), Expect = e-177
 Identities = 313/313 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaccttgtttcccttagcaaagtgattcatattaagaactttcttccaaggtagg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 gaattcaccttgtttcccttagcaaagtgattcatattaagaactttcttccaaggtagg 458

                                                                       
Query: 65  tctagaaaactttcccaaaccatgttattctcttatgtaaatgtttcatgatgaagtata 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 tctagaaaactttcccaaaccatgttattctcttatgtaaatgtttcatgatgaagtata 398

                                                                       
Query: 125 aatttctaccatgtagcggaaattgtgtttttctgggtagatagaagtagagccattctt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 aatttctaccatgtagcggaaattgtgtttttctgggtagatagaagtagagccattctt 338

                                                                       
Query: 185 tcatgaatgctcattttaataggctaattcacaactgaacactagaatgtatgagaactc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 tcatgaatgctcattttaataggctaattcacaactgaacactagaatgtatgagaactc 278

                                                                       
Query: 245 gagatcttgctaagactggtgaatactgtacagatgagctataggtttgatctttctgag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 gagatcttgctaagactggtgaatactgtacagatgagctataggtttgatctttctgag 218

                        
Query: 305 cagagaaacaact 317
           |||||||||||||
Sbjct: 217 cagagaaacaact 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 730
Length adjustment: 9
Effective length of query: 321
Effective length of database: 721
Effective search space:   231441
Effective search space used:   231441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)