BAC Information

Click to search

BAC

Clone NameMSMg01-268M10
Chromosome13 (Build37)
Map Location 92,046,907 - 92,047,195
singlet/doubletsinglet
Overlap geneRasgrf2
Upstream geneRps23, Atg10, LOC100042959, Ssbp2, LOC666889, Acot12, Zcchc9, Ckmt2
Downstream geneRasgrf2, Msh3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-268M10.T7 (MSMg01no268_m10.b1)MSMg01-268M10.TJ (MSMg01no268_m10.g1)
ACCAG409090AG409091
length691696
length of high quality
(start - end)
310 (45 - 354)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no268_m10.b1 PHD_FILE: MSMg01no268_m10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:07:07 2005CHROMAT_FILE: MSMg01no268_m10.g1 PHD_FILE: MSMg01no268_m10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:07:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAATATTCTATAATCATCATGGATGATGGGCTATAATTGTTGCATTT
ATTTGTTCTATCCTTACCTGGTTTTAGTACCGTGGTAATAATAATAGCAT
AGAATGGCATTCTTTCCTTCCCTGTTTAATGGACTCTTTTGAGAAACATT
GATGTTACCTCTCCTGTAAAAGTCTAGTATCACAGTGACTCCATCTGATT
CTGTAATTCTTTGTTGGGAGATTATTACTACCTCAATTTCATTCTTATAT
ATCTACTTAAATTGCTTTTATTTCCTTTTACTTGGTAGTTATGTGTCTCT
GATTTTTTTTCCTTTACCCCCCCCCCCCATTTTCTACCTTCTGAAATACA
GGTTTTGAAGTTACCCCTACAAAACTAATGGGTTTATTGATGTTTAGTTT
TCCAAATAACTAAGGTTTTATTTCATTGATTCTTTGTATTCTTTCAGTCT
TGATTTCATTAATTTTGTTCTGAGACTATTATTTCTTACCACCTAGTGCT
TTTAGATATGGCTTCTTCTTCTTTTTCTAAATCTGCTTTGGTTTATTGTG
TTTTTATGAATATATTAATAGATATAAACTTTGTTCTCAGCATTGCCTCT
GCCATATTCCAAAGGTTCCAATAAACTACACTTTCACTTTC
CGAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATAGGATTCTTCATGGCAAAAAAA
AAAAAATCCCAGGCAGTAACAGCAAACACAAAAGTCACTATTTGTGTGAA
GGATCTGAGAATATGATTATGTCAGCCATGTTGCATGAGAACAAATATTC
AGAAATAACCATGCACCATGCTTCAGACAGCCATCAGCAAAATTTTCACA
TCATCTTTTAAAAGGGTGCTCAGGCCAGCCTCCCCAAAGTTCAGAAAAGT
AAAATTACATTGAAAAATATTTTTATTGAAGAACGTTAGATTTATTTTAC
CTCTTACCATTATCTCAATATCCCCTACTTCCCCATATGATTTTTTTTGC
TAACTAGTAAAATTTTTAAATGAAAATAACATGAACAAGACATGTTCATT
CATTTTGTTCTTTGACAGTTTCATGCATGGTTGTAATGTATTTAGAATTC
TCTCATCTGCCGCCCTTCCTTTCCCATGTCCTCTTCCCTACAAATCTCTT
TTCTATGCTCTTGTTCATCTGTTTTGTGTTCCTCAGGGCTCTGCTAGGAC
CTTCTGTGTGGCCTTAGTATTGGAACTATCCACTGGTGTCTAGTGGTCTC
ACCACAGGGTACATAACTAACGACAGTAGTCCCTCCTCCCCATCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no268_m10.g1 MSMg01no268_m10.g1 CHROMAT_FILE:
MSMg01no268_m10.g1 PHD_FILE: MSMg01no268_m10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:07:07 2005
         (287 letters)



>mm_chr13_92046690_92047376
          Length = 687

 Score =  516 bits (267), Expect = e-151
 Identities = 281/289 (97%), Gaps = 6/289 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   ataggattcttcatggc------aaaaaaaaaaaaatcccaggcagtaacagcaaacaca 54
           |||||||||||||||||      |||||||||||||||||||||||||||||||||||||
Sbjct: 506 ataggattcttcatggcaaaaaaaaaaaaaaaaaaatcccaggcagtaacagcaaacaca 447

                                                                       
Query: 55  aaagtcactatttgtgtgaaggatctgagaatatgattatgtcagccatgttgcatgaga 114
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 aaagtcactatttgtgtgaaggatctgagaatatgattatgtcagccatgttgcatgaga 387

                                                                       
Query: 115 acaaatattcagaaataaccatgcaccatgcttcagacagccatcagcaaaattttcaca 174
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 acaaatattcagaaataaccatgcaccatgcttcagacagccatcagcaaaattttcaca 327

                                                                       
Query: 175 tcatcttttaaaagggtgctcaggccagcctccccaaagttcagaaaagtaaaattacat 234
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 326 tcatcttttaaaagggtgctcaggccagcctccccaaagttcagaaaggtaaaattacat 267

                                                            
Query: 235 tgaaaaatatttttattgaagaacgttagatttattttacctcttacca 283
           ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 266 tgaaaaatatttttattgaagaatgttagatttattttacctcttacca 218


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)