BAC Information

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BAC

Clone NameMSMg01-269D15
Chromosome13 (Build37)
Map Location 41,249,529 - 41,249,842
singlet/doubletsinglet
Overlap geneLOC637277
Upstream geneOfcc1, LOC666894, LOC100039048, Tcfap2a, EG621629, EG637157, LOC100039105, Gcnt2, Pak1ip1, Tmem14c, Mak, EG621771, Gcm2
Downstream geneElovl2, LOC268650, BC024659, Nedd9, EG621976, EG328231, 9530008L14Rik, LOC100039272, Hivep1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-269D15.T7 (MSMg01no269_d15.b1)MSMg01-269D15.TJ (MSMg01no269_d15.g1)
ACCAG409412AG409413
length718711
length of high quality
(start - end)
319 (45 - 363)54 (260 - 313)
definitionCHROMAT_FILE: MSMg01no269_d15.b1 PHD_FILE: MSMg01no269_d15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:07:38 2005CHROMAT_FILE: MSMg01no269_d15.g1 PHD_FILE: MSMg01no269_d15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:07:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGTGTGTACCTTACCTACTATTGCAGAAATAGAATGTAGTTAATGT
CCTGGCCTCAGCTCCATCTGTTCCATTCCATAGCTCATAGACTAAACCTA
TGAGTCAGGATAATATACACGCCCTTTGGCATCTCTGGGTAGTTGGTTCC
AGTACACAGCCTGGATACCAAAAGCTGTAGACAATTGCATCCCCCCCCCC
AAAATAGCACAATATCCACATATGACCTGTGGACTTTAAATCATCATTAG
ATGATTTAAAATAATACCCAATACTATATAGTCAGTGTTTGATATTATTT
AAAGAATAATATTCTAATATTCGCCCCCCCCACCTTTGGTGTAGTCATAT
TTGACCCATAATTTATTGAATTCATGGATAGAAAAAAAACTGTGGATATT
GGCAGCTATTTTTTATTTAATATTTTGTTGAATAGTATATCCTAGTTAAA
CATGCCAAAAGAAGACATTCAAATAAATACAACTTTGGCCTTATTTAAGC
CCCAAGAAACTCCACAGAATCAAACTGATACATTTAAACTGTGCAATGAG
CAAGAATTCTATGCTGGTTGTTCAGTGAGGGTGTCAGGCTGACTTTAACA
TTCTCTGCATTGGATTGCAAGGAAGTAATTTGGGGCAAGGGCTACAGAAT
ATTTTCTGTTAAGGGGAN
ATGATXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAAACCGGAGGNGAANN
ANAGAAGGTTTCCCAACAAACAGNCNCNANGNAAAAGGACANCGGGGGGN
CAAAGGGGAACGTTTTTTTCCCCCTGAAGGGGAGAGAGAGTTAGNTCAGA
GTCTTGGACAAGGTTGAAGTATNAAAGNAAAGGANTGGGGGAGGGGAGNA
GGGGTGTTTTTAGGATGAAAGAAANAAAATAAAAAGTGAAAANTGTNTAG
ATTTTTTGCCACACAGGCAAGGGCCTAGGGTTTGACAAAAGAGGGTTTGG
GTTTAGTGCTAGACCTGTTTGTTTTTTTCAACCAACAAGGAAGGGAACAA
AAGAACTTTTTTGGTGGTTTCCCCCCCCCCCCCCCGGGAGNNAGAAANAN
AAGNNAGAGNNNNGGNNGNNAGAAAAAGGAAGNNAAAGANGGGNNGGAAN
NGGGGGGNGNNGGNNNANNNNAGANAGNGGANNGGGAAGGGAAGGGGNNN
ANAAGAGAGGNNGAGNNGGGAGGGGGAGAGAAGAAGGANAGGAGGGGGNN
GAAAAAAAGAAGGGGGGGGAAAGGGAANAAGGAAAGAAGAGGAAAAGGAG
AGGANNGGNGGGAGAAAAAAAAAAGGGGANANAAAGAGGNNGAGGGAGGG
AAAAAAGAGAGGGAGAAAGGGAAGGAGAAAAAGGGGNGAAAGGAGGAAAG
GAGAAAAAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no269_d15.b1 MSMg01no269_d15.b1 CHROMAT_FILE:
MSMg01no269_d15.b1 PHD_FILE: MSMg01no269_d15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:07:38 2005
         (319 letters)



>mm_chr13_41249325_41250044
          Length = 720

 Score =  569 bits (294), Expect = e-166
 Identities = 309/314 (98%), Gaps = 1/314 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgtgtgtaccttacctactattgcagaaatagaatgtagttaatgtcctggcct 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgtgtgtaccctacctactattgcagaaatagaatgtagttaatgtcctggcct 264

                                                                       
Query: 65  cagctccatctgttccattccatagctcatagactaaacctatgagtcaggata-atata 123
           |||||||| |||||  |||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 265 cagctccacctgttttattccatagctcatagactaaacctatgagtcaggatagatata 324

                                                                       
Query: 124 cacgccctttggcatctctgggtagttggttccagtacacagcctggataccaaaagctg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cacgccctttggcatctctgggtagttggttccagtacacagcctggataccaaaagctg 384

                                                                       
Query: 184 tagacaattgcatccccccccccaaaatagcacaatatccacatatgacctgtggacttt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tagacaattgcatccccccccccaaaatagcacaatatccacatatgacctgtggacttt 444

                                                                       
Query: 244 aaatcatcattagatgatttaaaataatacccaatactatatagtcagtgtttgatatta 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaatcatcattagatgatttaaaataatacccaatactatatagtcagtgtttgatatta 504

                         
Query: 304 tttaaagaataata 317
           ||||||||||||||
Sbjct: 505 tttaaagaataata 518


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 720
Length adjustment: 9
Effective length of query: 310
Effective length of database: 711
Effective search space:   220410
Effective search space used:   220410
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)