BAC Information

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BAC

Clone NameMSMg01-269G15
Chromosome13 (Build37)
Map Location 44,915,924 - 45,042,791
singlet/doubletdoublet
Overlap geneJarid2, Dtnbp1
Upstream geneLOC100039432, A730030A06, EG637868, EG667157
Downstream geneHsp25-ps1, LOC100039502, LOC667204, LOC100039533, Mylip, Gmpr, Atxn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-269G15.T7 (MSMg01no269_g15.b1)MSMg01-269G15.TJ (MSMg01no269_g15.g1)
ACCAG409533AG409534
length712724
length of high quality
(start - end)		315 (46 - 360)289 (74 - 362)
definitionCHROMAT_FILE: MSMg01no269_g15.b1 PHD_FILE: MSMg01no269_g15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:07:52 2005CHROMAT_FILE: MSMg01no269_g15.g1 PHD_FILE: MSMg01no269_g15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:07:53 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,915,924 - 44,916,234)(45,042,503 - 45,042,791)
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGAAATCCGCCTGCTCCTGCCTCCTGAGTGCTGGGATTAAAGTCG
TGCGCAACCATGCCCAGCTTCTTCATGTTTTAAACTGTTGTTGGAACAGG
ATAGCATTGTCTTGTACAATGATTTAACTGCTGGTACCTGAAATATTACC
CTAGGAGGAGGAAATGGCTGGCCATCCTGCTTTTTCAGATTTGTCACGCC
AGCACTGTCAGCTGAGCAAAGAAGTCACAATTAGTTCATGAAGTACATTG
AGGGCGCCTGGCTATCAGTGAGCACTTAGGAGACCTTGGTGTCAATGCAG
ACAGTAGCATTTTCTTAGTCTGAGTCTCCATGAAGGTCATCTGTACATGG
TCTGCAAGATTTGGCTCTGTGTGGATTTGGTTCTCCCTCCCATCTTTGTA
GGTTGTGGCAAATGACATCTAATTGCTGAGCTGTCTCCCTAGTCCAGTGT
GTCCACCAACTTCCTGAGATTCTTGTTTTGGAACTTGAACCAAGTGAGGA
TTTTGCATTGTAATTTCTGTCAAAAGTATTTTGCCTAAATATCAAATTTG
CTTCCTGACCAATTGTCTCCCCATCCATTTAAAAAAATAATATTTTAGGA
TTGTTCCAAAGGTTGTCAAATAAGTAGCTAAAGAAAAGAAATCATAGAGA
ACCTGTTGCTTG

TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAGGGAGCCTTTATTAAAGCTACATTT
AAATGTGATGGGGGAAATTTAAAGATGCCTATGTATTATAAAGCAAACCT
ATCCTTTATTTTAATTTGTCTACCTTCAGACATTAATGTTTCTTGTGCTG
TTTAGATGCTTCTCTTGCATCTTTGCACCTAGATGACAAGTTCAGAAGGA
CTTAGTATATTTCCAGCCCAGCCCACCCCTATTTTCAGCATCATTTGGTA
TGGTCCCAGATCAGTGCGTGCATCTTTGTATGCCAGAGCCCCTGAGAGCT
TGCATTTTGCTTTATAGAGGCAGCACATTCCCATGTCTGTCTGCTTAAGC
CATCAGAATCATCGGCAAACCAAAAGGCTCAACACATTTTCTTTGGAGGA
AAACCAAGCCAGCTTCTGGCTGCAGCCTCGCTTCCTTTGTTCTCCATCTC
AGAAGATGCACGTGAGGGGAGCTGCCTGGTAACTGGGGTTCCTCTGGACC
AGCGTGCTTCTGCCCGTTTGCTCAGTTCTTAATCATGTCATCTCCAGGAC
TCCAGGAAAACAGTCAGAGGACCCCCTGTAGGTGGGACTTTATGTCATGT
TTTTCCTTAGCTGCTTTCATTTAGAACTCTTACATTTGCATGGTATACAG
ATGAAATAGTATTACAAAGCTGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no269_g15.b1 MSMg01no269_g15.b1 CHROMAT_FILE:
MSMg01no269_g15.b1 PHD_FILE: MSMg01no269_g15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:07:52 2005
         (315 letters)



>mm_chr13_44915720_44916434
          Length = 715

 Score =  586 bits (303), Expect = e-172
 Identities = 309/311 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagaaatccgcctgctcctgcctcctgagtgctgggattaaagtcgtgcgcaacc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagaaatccgcctgctcctgcctcctgagtgctgggattaaagtcgtgcgcaacc 264

                                                                       
Query: 65  atgcccagcttcttcatgttttaaactgttgttggaacaggatagcattgtcttgtacaa 124
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 265 atgcccagcttcttcatgttttaaactgttgttggaacaggatatcattgtcttgtacaa 324

                                                                       
Query: 125 tgatttaactgctggtacctgaaatattaccctaggaggaggaaatggctggccatcctg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgatttaactgctggtacctgaaatattaccctaggaggaggaaatggctggccatcctg 384

                                                                       
Query: 185 ctttttcagatttgtcacgccagcactgtcagctgagcaaagaagtcacaattagttcat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctttttcagatttgtcacgccagcactgtcagctgagcaaagaagtcacaattagttcat 444

                                                                       
Query: 245 gaagtacattgagggcgcctggctatcagtgagcacttaggagaccttggtgtcaatgca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 445 gaagtacattgagggcgcctggctatcagtgagcacttaggagaccttggtatcaatgca 504

                      
Query: 305 gacagtagcat 315
           |||||||||||
Sbjct: 505 gacagtagcat 515


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no269_g15.g1 MSMg01no269_g15.g1 CHROMAT_FILE:
MSMg01no269_g15.g1 PHD_FILE: MSMg01no269_g15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:07:53 2005
         (289 letters)



>mm_chr13_45042303_45042991
          Length = 689

 Score =  551 bits (285), Expect = e-161
 Identities = 288/289 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagggagcctttattaaagctacatttaaatgtgatgggggaaatttaaagatgcctatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 cagggagcctttattaaagctacatttaaatgtgatgggggaaatttaaagatgcctatg 430

                                                                       
Query: 61  tattataaagcaaacctatcctttattttaatttgtctaccttcagacattaatgtttct 120
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 429 tattataaagcaaacctatcctttattttaatttgtccaccttcagacattaatgtttct 370

                                                                       
Query: 121 tgtgctgtttagatgcttctcttgcatctttgcacctagatgacaagttcagaaggactt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 tgtgctgtttagatgcttctcttgcatctttgcacctagatgacaagttcagaaggactt 310

                                                                       
Query: 181 agtatatttccagcccagcccacccctattttcagcatcatttggtatggtcccagatca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 agtatatttccagcccagcccacccctattttcagcatcatttggtatggtcccagatca 250

                                                            
Query: 241 gtgcgtgcatctttgtatgccagagcccctgagagcttgcattttgctt 289
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 gtgcgtgcatctttgtatgccagagcccctgagagcttgcattttgctt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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