Query= MSMg01no270_e21.b1 MSMg01no270_e21.b1 CHROMAT_FILE:
MSMg01no270_e21.b1 PHD_FILE: MSMg01no270_e21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:08:55 2005
(350 letters)
>mm_chr13_109687616_109688365
Length = 750
Score = 607 bits (314), Expect = e-178
Identities = 344/360 (95%), Gaps = 10/360 (2%)
Strand = Plus / Plus
Query: 1 tgttcttttcctaggtctcatggaaacaaatcacaaggatgtagactaactttggctcca 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 201 tgttcttttcctaggtctcatggaaacaaatcacaaggatgtagcctaactttggctcca 260
Query: 61 ggagcttcactcaataatgttatgtcttgtgggcgaagattggttgactctagtagggtg 120
|||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct: 261 cgagcttcactcaataatgttatgtcttgtgggcgaagattcgttaactctagtagggtg 320
Query: 121 actccaatcattttaaaattaggtttaaatgtgtttgttttatttatgtgcatgtgtatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actccaatcattttaaaattaggtttaaatgtgtttgttttatttatgtgcatgtgtatg 380
Query: 181 tgctaggatgggtttatgtgtagca----------ggtgcttgtgggactagaggttgta 230
||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 381 tgctaggatgggtttatgtgtagcatatgtatgcaggtgcttgtgggactagaggttgta 440
Query: 231 ggatctcttggaactggggttgtaggtggttgagaaccacctgaactgtgtgctaggaac 290
|||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 441 ggatctcttggaaccggggttgtaggtggttgagaaccacctgaactgtgtactaggaac 500
Query: 291 ccaaaccaatgtcttctgcaagatctgtaaaccctgctaagccacctcctctacctctta 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccaaaccaatgtcttctgcaagatctgtaaaccctgctaagccacctcctctacctctta 560
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 350
Length of database: 750
Length adjustment: 9
Effective length of query: 341
Effective length of database: 741
Effective search space: 252681
Effective search space used: 252681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no270_e21.g1 MSMg01no270_e21.g1 CHROMAT_FILE:
MSMg01no270_e21.g1 PHD_FILE: MSMg01no270_e21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:08:55 2005
(690 letters)
>mm_chr13_109879591_109880684
Length = 1094
Score = 1234 bits (638), Expect = 0.0
Identities = 676/691 (97%), Gaps = 6/691 (0%)
Strand = Plus / Minus
Query: 1 acgagtgtgaagtatattcatctgtttagtgatgtgggagacactcccttgctagattat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 846 acgagtgtgaagtatattcatctgtttagtgatgtgggagacactcccttgctagattat 787
Query: 61 cacctgaatactagaggaggtgtatggtgcatctattgtcttaatctacatggtagcttg 120
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 786 cacctgaatactagaggaggtgtattgtgcatctattgtcttaatctacatggtagcttg 727
Query: 121 taacaacattctcttaagtattttctgggaagaataactgaattgatatgatgcacactt 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 726 taacaacattctcttaagtattttctgggaagaataactgaattgatatgatgcgcactt 667
Query: 181 ttattgtttaaatatgaaagcatgtatgtactgagaccacagctagaacctatatattgt 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 666 ttattgtttaaatatgaaagcatgtatgtactgagaccacagctagaacctatagattgt 607
Query: 241 actagtgatgacaacgtatggttgaacgttgggatactttggaaaacgctttgttctttg 300
||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct: 606 actagtgatgacaacgtatggttgaacgttgggatacttcggaaaacgcattgttctttg 547
Query: 301 gccttattgccttttctcttgtatcaagatgaaacctataatcatctttagcacctattc 360
| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 546 gtcttattgccttttctcttgtattaagatgaaacctataatcatctttagcacctattc 487
Query: 361 tgactcaacatctatataacccatctccccctactaattctgaaacaaataagttaattt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 tgactcaacatctatataacccatctccccctactaattctgaaacaaataagttaattt 427
Query: 421 gttaataataatttcaattattttttctgacactttcca-ttccagatgtcatgtaacta 479
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 426 gttaataataatttcaattattttttctgacactttccaattc-agatgtcatgtaacta 368
Query: 480 tactc----cacaaactccagtatttacttacaaattaccgcacattgccagataaatag 535
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 tacttagatcacaaactccagtatttacttacaaattaccgcacattgccagataaatag 308
Query: 536 cgaggtgcttctatgctgattttctttgaatagaaataggctttgttgaggtagcaggcg 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 cgaggtgcttctatgctgattttctttgaatagaaataggctttgttgaggtagcaggcg 248
Query: 596 tttgtagataaaatattttttggaaaatctttagttgaactgactagngtttttattttc 655
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 247 tttgtagataaaatattttttggaaaatctttagttgaactgactagtgtttttattttc 188
Query: 656 ttttcattgttgctcttttctcttttttttt 686
|||||||||||||||||||||||||||||||
Sbjct: 187 ttttcattgttgctcttttctcttttttttt 157
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 690
Length of database: 1094
Length adjustment: 10
Effective length of query: 680
Effective length of database: 1084
Effective search space: 737120
Effective search space used: 737120
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
