BAC Information

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BAC

Clone NameMSMg01-271H02
Chromosome13 (Build37)
Map Location 78,804,503 - 78,805,110
singlet/doubletsinglet
Overlap genenone
Upstream geneD13Mgi7, 1110033M05Rik, 1700013G10Rik, Nr2f1, EG666856, LOC268676, LOC100042683, LOC622365, LOC100043052
Downstream geneEG666883
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-271H02.T7 (MSMg01no271_h02.b1)MSMg01-271H02.TJ (MSMg01no271_h02.g1)
ACCAG410996AG410997
length733732
length of high quality
(start - end)
688 (46 - 733)662 (71 - 732)
definitionCHROMAT_FILE: MSMg01no271_h02.b1 PHD_FILE: MSMg01no271_h02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:10:19 2005CHROMAT_FILE: MSMg01no271_h02.g1 PHD_FILE: MSMg01no271_h02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:10:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTCAGTTTGAACTAAAGAGATTTTTTTTACATTAAAATAATTACT
TGATTTCTCCTTGGGGTAAACATATTAGGAAAAAAGTAATATCCTTTTGA
GCAACAAAAAGAAAAAAAGGCCTAGGAGCCAAAGCCCACTGAGGTTATAC
TCTTGGCCTTACTAAAAATGAAAATCTGGGCAAGTGCATTGTTAATTCTG
TTTTTATCATCTGTAAAACGGAGCAAACAATATCTGTCTTGCGGAGTCCC
AGTAAAAATGAAACAAAATAATGTAATCACATGCTGCCAAATATAAAAGA
GTGTAGCTGCTACTGGAAATCATATTAGTCTCATTTTTTTCTTTTCTCCA
AGTGCTTAATAAAGTACTGGACACATGACTTCACCCTCAGAATGGAATGT
TTAAAGACAACAAAACATTTCCTTTGAAATTATCTCTATGCATGAATCTA
AGATTGATAATTTGCATGTTCACAAGAAAATAAGCACAGATCTGACCGTA
TAATTCTTAAGCCTGGGGAAACAGAAACAGCAAACATATTTGCTCACATT
TCTAAAATAATGTCTAACATTATCAGCTGGGAAATTTTCTTTTAGGTGTA
AAATCAGGTATTGTCAGCCCTAATGTCCATCTCAGTATAGGTCTGAGCAG
ATGTAGAGTGAGTTAGGTACAGAATAGGAGGTA
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAGAACTTTTATCATGAATG
GGTGTTGGATCTTGTCAAATGCTTTTTCTGCATCCAACGAGATGATCATG
TGGTTTTTGTCTTTGAGTTTGTTTATATAGTGGATTACATTGATGGATTT
TCGTATATTAAACCATCCCTGCATTCCTGGAATAAAACCTACTTGGTCAG
GATGGATGATTGCTTTAATGTGTTCTTGGATTCGGTTAGCGAGAATTTTA
TTGAGGATTTTTGCATCGATATTCATAAGAGAAATTGGTCTGAAGTTCTC
TATCTTTGTTGGATCTTTCTGTGGTTTAGGTATCAGAGTAATAGTGGCTT
CATAAAATGAGTTGGGTAGAGTACTTTCTACTTCTATCTTGTGAAAAAGT
TGTGCAGAACTGGAATTAGATCTTCTTTGAAGGTCTGATAGAACTCTGCA
CTAAACCCGTCTGGTCCTGGGCTTTTTTTGGCTGGGAGACTATTTATAAC
TGCTTCTATTTCTTTAGGGGATATGGGACTGTTTAGAAGGTCAACTTGAT
CCTGATTCAACTTTGGTACCTGGTATCTGTCCAGAAATTTGTCCATTTCG
TCCAGGTTTTCCAGTTTTGTTGAGTATAGCCTTTTGTAGAAGGATCTGAT
GGTGTTTTGGATTTCTTCAGGATCTGTTGTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no271_h02.b1 MSMg01no271_h02.b1 CHROMAT_FILE:
MSMg01no271_h02.b1 PHD_FILE: MSMg01no271_h02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:10:19 2005
         (688 letters)



>mm_chr13_78804023_78805110
          Length = 1088

 Score = 1123 bits (581), Expect = 0.0
 Identities = 602/609 (98%), Gaps = 2/609 (0%)
 Strand = Plus / Minus

                                                                        
Query: 81   tagg-aaaaaagtaatatccttttgagcaacaaaaagaaaaaaaggcctaggagccaaag 139
            |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1088 taggaaaaaaagtaatatccttttgagcaacaaaaag-aaaaaaggcctaggagccaaag 1030

                                                                        
Query: 140  cccactgaggttatactcttggccttactaaaaatgaaaatctgggcaagtgcattgtta 199
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1029 cccactgaagttatactcttggccttactaaaaatgaaaatctgggcaagtgcattgtta 970

                                                                        
Query: 200  attctgtttttatcatctgtaaaacggagcaaacaatatctgtcttgcggagtcccagta 259
            ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct: 969  attctgtttttatcatctgtaaaacggaggaaacaatatctgccttgcggagtcccagta 910

                                                                        
Query: 260  aaaatgaaacaaaataatgtaatcacatgctgccaaatataaaagagtgtagctgctact 319
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 909  aaaatgaaacaaaataatgtaatcacatgctgccaaatataaaagagtgtagctgctact 850

                                                                        
Query: 320  ggaaatcatattagtctcatttttttcttttctccaagtgcttaataaagtactggacac 379
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 849  ggaaatcatattagtctcatttttttcttttctcccagtgcttaataaagtactggacac 790

                                                                        
Query: 380  atgacttcaccctcagaatggaatgtttaaagacaacaaaacatttcctttgaaattatc 439
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789  atgacttcaccctcagaatggaatgtttaaagacaacaaaacatttcctttgaaattatc 730

                                                                        
Query: 440  tctatgcatgaatctaagattgataatttgcatgttcacaagaaaataagcacagatctg 499
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 729  tctatgcatgaatctaagattgataatttgcatgttcacaagaaaataagcacatatctg 670

                                                                        
Query: 500  accgtataattcttaagcctggggaaacagaaacagcaaacatatttgctcacatttcta 559
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669  accgtataattcttaagcctggggaaacagaaacagcaaacatatttgctcacatttcta 610

                                                                        
Query: 560  aaataatgtctaacattatcagctgggaaattttcttttaggtgtaaaatcaggtattgt 619
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609  aaataatgtctaacattatcagctgggaaattttcttttaggtgtaaaatcaggtattgt 550

                                                                        
Query: 620  cagccctaatgtccatctcagtataggtctgagcagatgtagagtgagttaggtacagaa 679
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549  cagccctaatgtccatctcagtataggtctgagcagatgtagagtgagttaggtacagaa 490

                     
Query: 680  taggaggta 688
            |||||||||
Sbjct: 489  taggaggta 481


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 688
Length of database: 1088
Length adjustment: 10
Effective length of query: 678
Effective length of database: 1078
Effective search space:   730884
Effective search space used:   730884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)