ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCATTTTTCTCCATGTCTGTACTCACTGTGTGCTTAGCTGCTGGTTAGG
TATGCACAAGGCTTGGCTCTTCCTCCTCGTGAGTTCATGAGCTCTGCTAA
GTCAATAATGTTGCTTTCAGATGCACTAGTATGGTGCCTGCAGAATGATG
GTTATATAGAAAATGGATGATTGAAGTCAGAGCTCAGAGAATAGATGGTA
TGTGAGGAGGGAATGGTGGAAGCAGGACAGTGGGTCAGAAGGCTTGTAGG
AAAGGGAGAAGAGCATCCATGGGGTAGAAGGCTCCATTGAAGAATTGATG
GATATATGGTTGGGGGACTGATCCAACTCTAAGAGTGAATAAAGGACAGA
AGAATGGGGAATCTAAGGTTACTGACCAGAAACGGGCTGGACTGCTGTGT
CATAAGCTGAGGTGTTAGAACAAAAGATGCCCAGGGAGTTAGAGGACCCA
GAAGGCTCAGTAAAGGTAAAGCAACATTGTAGGAGCTGGGGAAGAGAATG
GGTGGACCTTTTGAACATCCCCCTCATTGCAGTTTTTATAGTTGTGTTAG
GGAAGGCATGGTACATAGTGACCAGATCACAGCTTTTTCCTCAAAGAGGC
CTTAACACAGGGTGGCAGCAATTAGGAAGGAGCTCTGTACAGAGAGGGTT
TCTGTTGGGTTGGACAGTGGCAGCTTGGAAAAGATGATTTAAAATT

TACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTTTGAGATGTTTCTTGGCCATTTTTA
TTTCTCCTTTAGAAGAACTAAAGAGCTGTCCAGATCTTGCCCATTTATAA
AATAGGTCACTTGGTTTTGTTTTTTGTTGATTATTTCTTGAGTTTGTTCT
ATATTGTGGAAATTAAGCCTTTGTCAGATATACAACTGGCAAAGATTCTC
TCCTACTTTGTGGGTTTCCTCTTTACCCTATTGGTTTTTTTCTTAACTTT
AGTTTTATGATGTGAGACTTGTCAATTGTTGGCCTTAATTCCTGGACAAA
TGGAGTCCTATTCATATTGTCCTTTTCCATCTTGTAGGGTGCTGACTACA
TTTTCTTCTAGCAGTTTCAACATTTCAGATTTCACATTGAGGTGTGTGGT
CCATTTGGACTTAATTTTTTACACAAGGCGTTAGATACCGGTCAAATTTC
ATTCTTCAGTATGTGGGCATCCAGTTTTTTCTCCCCCAAATGAAACAAAA
AATTTTTTTAGGGGATTGGTTTCTTATTTTAGAGGCACAAACAATTTTAT
ATTCCCCTTTGTTTAAACATTTTTTCCTTTTTTTCCATCCTCCCTTTCTT
TTTTCTTGGTTTATAAAATCTTAAACACCTGTGGGCTCTCCCCCCCCTCC
TTTGTTTTTCGATAAAAATACCACCCTTTCTTCC

Query= MSMg01no271_k03.b1 MSMg01no271_k03.b1 CHROMAT_FILE:
MSMg01no271_k03.b1 PHD_FILE: MSMg01no271_k03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:10:33 2005
         (687 letters)



>mm_chr13_29543434_29544519
          Length = 1086

 Score = 1203 bits (622), Expect = 0.0
 Identities = 669/686 (97%), Gaps = 5/686 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcatttttctc--catgtctgtactcactgtgtgcttagctgctggttaggtatg 61
           |||||||||||||| |  |||||||||||||||| |||||||||||||||||||||||||
Sbjct: 886 ggaattcatttttc-caacatgtctgtactcactatgtgcttagctgctggttaggtatg 828

                                                                       
Query: 62  cacaaggcttggctcttcctcctcgtgagttcatgagctctgctaagtcaataatgttgc 121
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 827 cacaaggcttggcttttcctcctcgtgagttcatgagctctgctaagtcaataatgttgc 768

                                                                       
Query: 122 tttcagatgcactagtatggtgcctgcagaatgatggttatatagaaaatggatgattga 181
           ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| 
Sbjct: 767 tttcagatgcactagtatggtgcctgcagaatggtggttatgtagaaaatggatgattgg 708

                                                                       
Query: 182 agtcagagctcagagaatagatggtatgtgaggagggaatggtggaagcaggacagtggg 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 agtcagagctcagagaatagatggtatgtgaggagggaatggtggaagcaggacagtggg 648

                                                                       
Query: 242 tcagaaggcttgtaggaaagggagaagagcatccatggggtagaaggctccattgaagaa 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 tcagaaggcttgtaggaaagggagaagagcatccatggggtagaaggctccattgaagaa 588

                                                                       
Query: 302 ttgatggatatatggttgggggactgatccaactctaagagtgaataaaggacagaagaa 361
           |||  ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 587 ttg--ggatatacggttgggggattgatccaactctaagagtgaataaaggacagaagaa 530

                                                                       
Query: 362 tggggaatctaaggttactgaccagaaacgggctggactgctgtgtcataagctgaggtg 421
           ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 529 tggggaatcgaaggttactgaccagaaacaggctggactgctgtgtcataagctgaggtg 470

                                                                       
Query: 422 ttagaacaaaagatgcccagggagttagaggacccagaaggctcagtaaaggtaaagcaa 481
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 ttagaacaaaagatgcccaaggagttagaggacccagaaggctcagtaaaggtaaagcaa 410

                                                                       
Query: 482 cattgtaggagctggggaagagaatgggtggaccttttgaacatccccctcattgcagtt 541
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 409 cattgtaggagctggggaagagaatgggtggaccttctgaacatccccctcattgcagtt 350

                                                                       
Query: 542 tttatagttgtgttagggaaggcatggtacatagtgaccagatcacagctttttcctcaa 601
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 tttatagttgtgttagggaaggcatggtacatagtgaccagatcacagctttttcctcaa 290

                                                                       
Query: 602 agaggccttaacacagggtggcagcaattaggaaggagctctgtacagagagggtttctg 661
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 agaggccttgacacagggtggcagcaattaggaaggagctctgtacagagagggtttctg 230

                                     
Query: 662 ttgggttggacagtggcagcttggaa 687
           ||||||||||||||||||||||||||
Sbjct: 229 ttgggttggacagtggcagcttggaa 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 687
Length of database: 1086
Length adjustment: 10
Effective length of query: 677
Effective length of database: 1076
Effective search space:   728452
Effective search space used:   728452
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)