BAC Information

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BAC

Clone NameMSMg01-271P09
Chromosome13 (Build37)
Map Location 62,466,092 - 62,466,364
singlet/doubletsinglet
Overlap genenone
Upstream geneCts7-ps, EG624056, LOC665717, Ctsm, Cts3, EG665401, LOC624140, EG623505, LOC665415, LOC673332, BC052688, EG638502, LOC100041382, EG633250, EG624180, LOC100041420, LOC665444, EG630579, EG630594, LOC665455, LOC100041430, LOC100041962, LOC100041437
Downstream geneLOC100041979, LOC100041986, 8430426H19Rik, LOC100041455, 6720457D02Rik, EG665503, LOC100041493, LOC630857, EG630978, EG435366, LOC380850, LOC630951, Fbp2, Fbp1, LOC100042090, EG665524, 2010111I01Rik, Fancc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-271P09.T7 (MSMg01no271_p09.b1)MSMg01-271P09.TJ (MSMg01no271_p09.g1)
ACCAG411371AG411372
length738744
length of high quality
(start - end)
312 (45 - 356)278 (376 - 653)
definitionCHROMAT_FILE: MSMg01no271_p09.b1 PHD_FILE: MSMg01no271_p09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:10:58 2005CHROMAT_FILE: MSMg01no271_p09.g1 PHD_FILE: MSMg01no271_p09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:10:58 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATACCGTAGAGCAACCCTTCATATGTAATGAATGTGATAAAGTCTT
TTCTTTTAAACATCATCTCCAAACACATATAAGCATACATACTGGACAGA
AACCCTTCAAATGTAATCAGTGTGATAAATCCTTTTCAAAACATAATCAT
CTTCAACGTCATAGAAGAACACATACTGGAGAGAAACCCTACAAATGTAA
TCAGTGTGATAAAGCCTTTTCTGAGAAATGTAATCTCCAAAGCCATATAA
AGATACATACTGGAGAGAAGCCTTACAAATGTAATCAGTGTGATAAAGCC
TTTTCTTGATACTTTTCTCCCCCCCTCACAGAAGAACACATACTGGAGAG
AAACCTTTCAAATGTAATCAATGTGATAAAGCCTTTTCTCAATACAGTAC
TCTTCAAACTCATAGAAGAACACATACTGGAGAGAAACCCTTCAAATGTA
ATAAATGTGATAAAGCCTTTTCAAAACACAGTACTCTTCAATCTCATAGA
AGAACACATAGTGGAGAGAAACCCTTCAAATGTAATCAATGTGATAAAGC
CTTCTCTGAGAAATGTCATCTCCAAAAACATATAAGGATACATACTGGAG
AGAAACCCTACAAATGTAATGAATGTGATAAAGCCTTTTCTCAATATAAT
ACTCTTCAAACTCATAGAAGAATACATACTGGAGAGAN
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTTCAAAAAAATTCCAGTTTTTTGAGCTATACTTTTTACATTTTAT
ATGTAGTTTTTTTTTTTTTTTCCATGCATGTGTCTGGGCTCTGTATTTTC
TGAGACCAGAAGACAACCGCAAACACTTGGCAATAATAGTTAACAACCAA
GTAGTTTGGGGAATGGGACCCCTGTCTGCTGTAACAATATCCAGTTCATG
TTAAGTGTTAGACTGTCTATATGGCAAGGTGCTTATTTAAATTGTACTTT
TGTATATGTTATTAAATAATATTGCATTATTTTCTACTTCATTTTCTATT
CTTTATTTTTTCCCCCCCCCGCCCAAATATCTTCTTTTTAAGGATAAAAA
ATAATTCACATATACATGAAAAAAACCTGCTGTGTGCATTCCTTTGACTG
CATTTGTTTTTTCAAGGATGAATAATATTCATTCAATAATTGCATTGAAT
ATGCCATGAGGAAGCTCATCCCAGCCTAAGGATTTTTTTTACTTGTGGGA
GAATCTGACCCTGGAGTGACCTAGGATATCTTGCCCAAAAACCAAGAAGA
ATAAAATTTCCAGTGGTAAACATCTCAGATAACACTTACTGGTGTCAGGA
ACCCTATCTTCTGGAGCTGCAGCGAACACTGTGGAAAATTTCCTGAGACA
ATCAGTCTGCCTTGGTTCTCTGGACCTTGCAACACACCCTGATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no271_p09.g1 MSMg01no271_p09.g1 CHROMAT_FILE:
MSMg01no271_p09.g1 PHD_FILE: MSMg01no271_p09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:10:58 2005
         (278 letters)



>mm_chr13_62465892_62466570
          Length = 679

 Score =  451 bits (233), Expect = e-131
 Identities = 263/273 (96%), Gaps = 1/273 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatatcttcttt-ttaaggataaaaaataattcacatatacatgaaaaaaacctgctgtg 59
           |||||||||||| || ||||| |||||||||||||| ||||||||| |||||||||||||
Sbjct: 201 aatatcttctttgtttaggatgaaaaataattcacaaatacatgaagaaaacctgctgtg 260

                                                                       
Query: 60  tgcattcctttgactgcatttgttttttcaaggatgaataatattcattcaataattgca 119
           |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct: 261 tgcattcctttgactgcatttgttttttcagggatgaaaaatattcattcaataattgca 320

                                                                       
Query: 120 ttgaatatgccatgaggaagctcatcccagcctaaggattttttttacttgtgggagaat 179
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 321 ttgaatatgccatgaggaagctcatcccagcctaaggatttttttcacttgtgggagaat 380

                                                                       
Query: 180 ctgaccctggagtgacctaggatatcttgcccaaaaaccaagaagaataaaatttccagt 239
           |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct: 381 ctgaccctggagtgacctaggatatcttgcccaaaaaccaggaagaataaaacttccagt 440

                                            
Query: 240 ggtaaacatctcagataacacttactggtgtca 272
           |||||||||||||||||||||||||||||||||
Sbjct: 441 ggtaaacatctcagataacacttactggtgtca 473


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 679
Length adjustment: 9
Effective length of query: 269
Effective length of database: 670
Effective search space:   180230
Effective search space used:   180230
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)