Query= MSMg01no273_b10.b1 MSMg01no273_b10.b1 CHROMAT_FILE:
MSMg01no273_b10.b1 PHD_FILE: MSMg01no273_b10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:12:24 2005
(322 letters)
>mm_chr13_88647816_88648536
Length = 721
Score = 509 bits (263), Expect = e-148
Identities = 301/317 (94%), Gaps = 8/317 (2%)
Strand = Plus / Plus
Query: 5 gaattcagttagtctcatcactaactgaattagctttcagaacacattcctatactagta 64
|||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 212 gaattcagttagtctcat----aa---aattagctttcagaacacattcctatactagta 264
Query: 65 aacctgtctctcactcacatcattctaattattctgtgccagtcaaaaattgctacttta 124
| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 265 accctgtctctcactcagatcattcaaattattctgtgccagtcaaaaattgctacttta 324
Query: 125 cattaagagtataggaaacttttgctaaagtttaaactaaagatgtcttacattttaaat 184
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 catcaagactataggaaacttttgctaaagtttaaactaaagatgtcttacattttaaat 384
Query: 185 aggcagtttcacttctttaaatgatagaactaatatgctggattccctttgcctcctcat 244
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 385 aggcagtttcacttctttaaatgatagaactaatatgctggattctctttgcctcctcat 444
Query: 245 aaactacacattctttttaatgtttttccctagattttattcttttctctctcccataca 304
| |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct: 445 acactacacattctttttaatgtttt-ccctagatttcattcttttctctctcccataca 503
Query: 305 agtaccatacacaatta 321
|||||||||||||||||
Sbjct: 504 agtaccatacacaatta 520
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 721
Length adjustment: 9
Effective length of query: 313
Effective length of database: 712
Effective search space: 222856
Effective search space used: 222856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no273_b10.g1 MSMg01no273_b10.g1 CHROMAT_FILE:
MSMg01no273_b10.g1 PHD_FILE: MSMg01no273_b10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:12:24 2005
(292 letters)
>mm_chr13_88799376_88800067
Length = 692
Score = 547 bits (283), Expect = e-160
Identities = 289/291 (99%)
Strand = Plus / Minus
Query: 1 actccggaaaattgttctctgacttctatacatattcattggtagaagagcatgagcaat 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 491 actccggaaaattgttctctgacttctatacatattcattggtagaagagtatgagcaat 432
Query: 61 aacatacacactcacaaacaaacgtaaacaaatatgtaatattattaaagatgttttcta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 aacatacacactcacaaacaaacgtaaacaaatatgtaatattattaaagatgttttcta 372
Query: 121 tttgaatgacattatcaggtctttattgcctttcttctctctacttcctctttctatcaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 tttgaatgacattatcaggtctttattgcctttcttctctctacttcctctttctatcaa 312
Query: 181 tttggctttttattcatttatttatagacatattaattttttctgggggaatttgttccg 240
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 311 tttggctttttattcatttatttatagacattttaattttttctgggggaatttgttccg 252
Query: 241 ttcaaagatgatttttaatatttattcacattattctgaaaaataatattg 291
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 ttcaaagatgatttttaatatttattcacattattctgaaaaataatattg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space: 193289
Effective search space used: 193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
