ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCACTTCCTAAGGCCAAATGATACTTGATCATAGTATCCAGTATGTGCT
TGTTACTCATTAACTCATCAATCAGTCCATTTGTATTTATTGGTTTCCAC
ATGTTGACTAATGTGAATACTACTACTGTGTGTTTCCTGTTTGATTTTCT
GTTTTCATTTTGTTTGGGCATATACCTGAAGTATGCCATGTTGATTTTTT
AAAAAAAGAATCACTATTGTTCCACCCAGTAATATTTTATATTCATGCCT
ACAATCCTATGACATGGTGCTGCTGCTTGTCTGGGGGAGTCACTCAGTTT
GTTCCCTGGCACTGACAAAGACTTGGCCATCTGGGAAAGACAGAAGACCA
TGCCTCTGGGAAAGGGAAAAATAATAGCTGTATCCCTTCAGGATGGTAGA
GTCCTAAGGCTGGGAGTCCAGTAAATGGATTCTGGCTTAGGTCCTCCCGT
TTCCACTGTTGGGCCTGCTCGGGGAGCAGAGTCACTTTTGCATTCTTTGT
CTGCCTATATTCTTCAATTCCCCTTCAATCCTACATCCATATCAACAGGC
ATAATTTTTCCTTCATATTGTTATTTTATGTTTTTAACTGACACAATTAT
CATATAAAGGAAAGGGGTATAATTTGATGTATTGGTTTATATATACAAAA
TATTGACCAATTCAGGGTACTTAGCATGTC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAGC
ACCTGAAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAA
AACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAA
ATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTC
CTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCAGT
CTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAA
TACCTCTCCTGGGTATATATCCAGAAGATGTCCCAACCGGTAAGAAGGAC
ACATGCTCTACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAGGCTG
GAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGT
ACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATG
AAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGT
AAGACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGTGGAT
ATTAGCTCCAAACCTAGGATTCCCAAGATATAAGATACAATTTTCTGAAC
ACATGAAACTCAAGAGGAATGAAGACTGAAGTG

Query= MSMg01no273_n03.b1 MSMg01no273_n03.b1 CHROMAT_FILE:
MSMg01no273_n03.b1 PHD_FILE: MSMg01no273_n03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:16 2005
         (672 letters)



>mm_chr13_81915459_81916531
          Length = 1073

 Score = 1216 bits (629), Expect = 0.0
 Identities = 662/675 (98%), Gaps = 5/675 (0%)
 Strand = Plus / Plus

                                                                       
Query: 3   cggaattcacttcctaaggccaaatgatacttgatcatagtatccagtatgtgcttgtta 62
           |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||
Sbjct: 199 cggaattcacttcctaaggccaaatgatacttgattgtagtatccagtatgtgcttgtta 258

                                                                       
Query: 63  ctcattaactcatcaatcagtccatttgtatttattggtttccacatgttgactaatgtg 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 ctcattaactcatcaatcagtccatttgtatttattggtttccacatgttgactaatgtg 318

                                                                       
Query: 123 aatactactactgtg----tgtttcctgtttgattttctgttttcattttgtttgggcat 178
           |||||||||||||||    |||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 aatactactactgtgagtgtgtttcctgtttgattttctgttttcattttgtttgggcat 378

                                                                       
Query: 179 atacctgaagtatgccatgttgattttttaaaaaaagaatcactattgttccacccagta 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 atacctgaagtatgccatgttgattttttaaaaaaagaatcactattgttccacccagta 438

                                                                       
Query: 239 atattttatattcatgcctacaatcctatgacatggtgctgctgcttgtctgggggagtc 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 439 atattttatattcatgcctacaatcctatgacatggtgctgctgcttgtcttggggagtc 498

                                                                       
Query: 299 actcagtttgttccctggcactgacaaagacttggccatctgggaaagacagaagaccat 358
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 499 actcagtttgttccctggcactgacaaagccttggccatctgggaaagacagaagaccat 558

                                                                       
Query: 359 gcctctgggaaagggaaaaataatagctgtatcccttcaggatggtagagtcctaaggct 418
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gcctctgagaaagggaaaaataatagctgtatcccttcaggatggtagagtcctaaggct 618

                                                                       
Query: 419 gggagtccagtaaatggattctggcttaggtcctcccgtttccactgttgggcctgctcg 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 gggagtccagtaaatggattctggcttaggtcctcccgtttccactgttgggcctgctcg 678

                                                                       
Query: 479 gggagcagagtcacttttgcattctttgtctgcctatattcttcaattccccttcaatcc 538
           |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 679 gggagcagggtcacttttgcattctttgtctgcctatattcttcaattcccctttaatcc 738

                                                                       
Query: 539 tacatccatatcaacaggcat-aatttttccttcatattgttattttatgtttttaactg 597
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 739 tacatccatatcaacaggcattaatttttccttcatattgttattttatgtttttaactg 798

                                                                       
Query: 598 acacaattatcatataaaggaaaggggtataatttgatgtattggtttatatatacaaaa 657
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 799 acacaattatcatataaaggaaaggggtataatttgatgtattggtttatatatacagaa 858

                          
Query: 658 tattgaccaattcag 672
           |||||||||||||||
Sbjct: 859 tattgaccaattcag 873


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1073
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1063
Effective search space:   703706
Effective search space used:   703706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)