BAC Information

Click to search

BAC

Clone NameMSMg01-273P24
Chromosome13 (Build37)
Map Location 68,934,379 - 69,088,703
singlet/doubletdoublet
Overlap geneAdcy2, LOC666205
Upstream geneBC048507, LOC666185, LOC100042687, LOC100042692, LOC674779, LOC677603, LOC100042124, LOC666222, AA414992, LOC666238, EG666245, EG666272, LOC100042223, Mtrr, LOC100042233, Fastkd3, 1700001L19Rik
Downstream geneLOC218332, Pols, A530095I07Rik, Srd5a1, Nsun2, LOC100042260, 3110006E14Rik, 4930547H16Rik, Med10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-273P24.T7 (MSMg01no273_p24.b1)MSMg01-273P24.TJ (MSMg01no273_p24.g1)
ACCAG412854AG412855
length718718
length of high quality
(start - end)		296 (386 - 681)293 (75 - 367)
definitionCHROMAT_FILE: MSMg01no273_p24.b1 PHD_FILE: MSMg01no273_p24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:28 2005CHROMAT_FILE: MSMg01no273_p24.g1 PHD_FILE: MSMg01no273_p24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:28 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,934,379 - 68,934,674)(69,088,411 - 69,088,703)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTCATCAGAGACAGCATTATGGAGCTAAGGGATTTTTATCATGAG
ACCGAGGTATAATAACCAGGATGCACATATACATAGACAAATGAATTTAA
CATGAGTTTAATGGGAGGTAAAAATATTTTAAAATATCCACAAGATTTGC
CAGTAGTAGCGGTGAGACCCTGCTGTTCTCACCTAGAACCATGCCCAGCA
CAAATGCTGTTCAACAGATATTTACTAAACAGACGAGCTGATGTTTCCAG
TTTGAAAACTAAAAACCTGATTATTATTCTCAAATTTATACACAAAGAGA
AGTCCAGGGCCAATACTTATTTTGATACCCTTCCCTCCCAACACCAAAAA
TACATTTTGATGAAATTTATAGACGATGTTAATTTAATACAACTTAACAC
AGTATCTATATTTGGACTATGGTCCATAGAAAATATGGTGGCCAGTGATA
CAGAAGAAGAACTCAGAGTTCACAGCCAGGTACAGCAATTGTCACTTTCT
GTGTCACTCGGACCTTGCGATGGTGAATCTCCACTATCCGCTTGACTGGA
CATGAAATCAGCATGGAAATGCACAGCTGGGTGTGTCTGCAGGGTTTTCC
AGCAAGGTGACTGACAATGAAAGAGCTAATTTGAATGTTGATGAGACCAC
ACTGTGGACTTGGGCCCC

AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACCATGAGTGGATGAAGTGTTTGCTC
ATTGGTGATCTGTTAAATGCATAGGCAATAGGGAACGAAGGGGTAACAGG
TGTGTTCATTGCCCAAAAGGTGTAGGGACTTACTGCCAGTCAATTGAGAG
CTTCAGTTAATGCCGGTATGTTTAAGTTACTGAAGTAAGACATACAGGTT
GATATGTGTATGCTCTGTTAACTGTGTGTCCCCATAAGCAATATACTCTG
AAATGTTACTGCAATCATCTTCACATAGATAAATGTGTAGCTTGCTGTGA
TTTTTAAAGTTTAAATATTTATATTTCACCCCCCCCCTGCTTATTCATGC
TGTAAAACTTAATGTGCCTTCTACTGTTTTTTTTAACAGACTTTTAAATA
TAATCATAAACTGTTGCATGCAGTAATTCATGAAGCGTTTGTGGCCTAAG
AAGAATAATCCATTGTTTTCCATATTAATATTCATGTTGCATAGCGTGTC
TGCATGANAGATGGGATTCCGTTCCTGCTTTTGCTGAAGGTGGATAAGAC
CCTGCCTAGTCAGACTGAATTTTTAAAGGAGTCTTTGTTTCTTTAATTTA
GCAAGATTAGTTCACTTTCCTTTGCTGACCATTTGCTCCTAGACAGCAGT
AATTCTCAGTGTTGGGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no273_p24.b1 MSMg01no273_p24.b1 CHROMAT_FILE:
MSMg01no273_p24.b1 PHD_FILE: MSMg01no273_p24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:28 2005
         (296 letters)



>mm_chr13_68934179_68934874
          Length = 696

 Score =  572 bits (296), Expect = e-168
 Identities = 296/296 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcccaacaccaaaaatacattttgatgaaatttatagacgatgttaatttaatacaactt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcccaacaccaaaaatacattttgatgaaatttatagacgatgttaatttaatacaactt 260

                                                                       
Query: 61  aacacagtatctatatttggactatggtccatagaaaatatggtggccagtgatacagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacacagtatctatatttggactatggtccatagaaaatatggtggccagtgatacagaa 320

                                                                       
Query: 121 gaagaactcagagttcacagccaggtacagcaattgtcactttctgtgtcactcggacct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaagaactcagagttcacagccaggtacagcaattgtcactttctgtgtcactcggacct 380

                                                                       
Query: 181 tgcgatggtgaatctccactatccgcttgactggacatgaaatcagcatggaaatgcaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcgatggtgaatctccactatccgcttgactggacatgaaatcagcatggaaatgcaca 440

                                                                   
Query: 241 gctgggtgtgtctgcagggttttccagcaaggtgactgacaatgaaagagctaatt 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gctgggtgtgtctgcagggttttccagcaaggtgactgacaatgaaagagctaatt 496


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 696
Length adjustment: 9
Effective length of query: 287
Effective length of database: 687
Effective search space:   197169
Effective search space used:   197169
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no273_p24.g1 MSMg01no273_p24.g1 CHROMAT_FILE:
MSMg01no273_p24.g1 PHD_FILE: MSMg01no273_p24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:28 2005
         (293 letters)



>mm_chr13_69088211_69088903
          Length = 693

 Score =  559 bits (289), Expect = e-164
 Identities = 292/293 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   accatgagtggatgaagtgtttgctcattggtgatctgttaaatgcataggcaataggga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 493 accatgagtggatgaagtgtttgctcattggtgatctgttaaatgcataggtaataggga 434

                                                                       
Query: 61  acgaaggggtaacaggtgtgttcattgcccaaaaggtgtagggacttactgccagtcaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 acgaaggggtaacaggtgtgttcattgcccaaaaggtgtagggacttactgccagtcaat 374

                                                                       
Query: 121 tgagagcttcagttaatgccggtatgtttaagttactgaagtaagacatacaggttgata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 tgagagcttcagttaatgccggtatgtttaagttactgaagtaagacatacaggttgata 314

                                                                       
Query: 181 tgtgtatgctctgttaactgtgtgtccccataagcaatatactctgaaatgttactgcaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 tgtgtatgctctgttaactgtgtgtccccataagcaatatactctgaaatgttactgcaa 254

                                                                
Query: 241 tcatcttcacatagataaatgtgtagcttgctgtgatttttaaagtttaaata 293
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 tcatcttcacatagataaatgtgtagcttgctgtgatttttaaagtttaaata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


| Home | SequenceCutter | Blast | Download |