BAC Information

Click to search

BAC

Clone NameMSMg01-275C06
Chromosome13 (Build37)
Map Location 77,285,964 - 77,478,132
singlet/doubletdoublet
Overlap gene2210408I21Rik, LOC631139
Upstream geneAK129128, Gm276, Mctp1, LOC666603, EG666607, Ankrd32
Downstream geneLOC675063, D13Mgi7, 1110033M05Rik, 1700013G10Rik, Nr2f1, EG666856, LOC268676, LOC100042683
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-275C06.T7 (MSMg01no275_c06.b1)MSMg01-275C06.TJ (MSMg01no275_c06.g1)
ACCAG413675AG413676
length731735
length of high quality
(start - end)		351 (381 - 731)288 (76 - 363)
definitionCHROMAT_FILE: MSMg01no275_c06.b1 PHD_FILE: MSMg01no275_c06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:49 2005CHROMAT_FILE: MSMg01no275_c06.g1 PHD_FILE: MSMg01no275_c06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:49 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,285,964 - 77,286,313)(77,477,846 - 77,478,132)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTCTCTTGCCTTATTAATTCAGTTCAAGAGTAAATAGTGAAAAGG
AATGGGGATAGCGGGCATCCTCTTTTTACATTTAAGACCATCTGAAAGAC
TATCAGGGTTCTCTCAGTAGAACACATGTAGGAATCTTATTTTTACTTTG
TTTATAGTCTGTCTTTATTTATTTATTTATTTATTTATTTATTTATTTAT
TTATTTATTTATTTCTCTTGTTCATCTGTTTGTTTTTAGTATTTTTATTC
AAACCAATAGCCTAGAACTTAAATGAAAATTAAAGAATCCTCAGTTTTGT
CTTAAAACAGTTATATAGGCTACCACCTGAGAACTGAATCAGGGATAAAA
CTCAGCCTCACAGTGCTGGGGTCACAGAGACTTGTCATTATCAATGTCCT
CTGAAGTATGCACCGTCACGGTAATCATTTCTAGAATTCCTGTGAACCTT
TTATTTATTTATCAGTAGTAATTTTTAAAATTATTTTTCTTGTTTTCCTA
ATTTAGTAACTTGAATCTTCTCTCTCTCTTTTTCCCTATCTTTCTCTTTC
TAAAGGTCTTTTGATTTCATTTCCTTTTANAGTATGTAAGTTCAGGCTGG
TGACAGTTCAGTGGCAAAGCACCTCACTAAGATTTGTGATAACTCTTTGT
TTGATCCATGGCATTGAAAATAAGATTCAAN

GATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATCTGAGTAAATAAGGTAAAGAGAG
AGAAGCAACATGAATCTGTCCCACTGACATGGCAAACAATGTCAAATGGC
AAACTGGAGCTCTGCCATAGAGGAAGGTACAGAGCATGCCTTCCATGCAC
GCTCCAGAAATGCAATCACTGCCTGGGTTCCATGCCCTGGATTTACTGTA
AAGTGAGAGAGAATGAAGGTAAGGTTGGAATAGTAAGGTACAGGCATAAG
AACCTTTATTATTTCAAAAGATCAGTGTACACTCATAGTGCTTCCTCTTC
AAAAGCACTCAATGTTTTTATGCACAACTGATCTATGTCCTAGGTTTCTG
AACCTCTAAGACGATTTTACTTTCTATAATGGCAAACTTGCTAAGTTGAG
ACAAGTATATCATTGATACACATTCAGGATCTCTTTTGTAGACTTCTGTT
CTTTCGAATGCCTCAGAAAGTAAGTCACTCATAATTCATTTGCAAAGGCT
AGACTAGATACTGTTGGCAGCTAACTCCACGTTAGAGGTTTTTTTTTTTT
AATTTTTTTATTAGATATTTTCTTCATTTACATTTCAAATGCTATCCCAA
AAGTCCCCTATGCCCTCCCCCCACCCTGCTCCCCTACCCACCCACTCCCA
CTTCTTGGCCCTGGCGTTCCCCTGTACTGGGGCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no275_c06.b1 MSMg01no275_c06.b1 CHROMAT_FILE:
MSMg01no275_c06.b1 PHD_FILE: MSMg01no275_c06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:14:49 2005
         (351 letters)



>mm_chr13_77285764_77286514
          Length = 751

 Score =  671 bits (347), Expect = 0.0
 Identities = 349/350 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaactgaatcagggataaaactcagcctcacagtgctggggtcacagagacttgtcatta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaactgaatcagggataaaactcagcctcacagtgctggggtcacagagacttgtcatta 260

                                                                       
Query: 61  tcaatgtcctctgaagtatgcaccgtcacggtaatcatttctagaattcctgtgaacctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcaatgtcctctgaagtatgcaccgtcacggtaatcatttctagaattcctgtgaacctt 320

                                                                       
Query: 121 ttatttatttatcagtagtaatttttaaaattatttttcttgttttcctaatttagtaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttatttatttatcagtagtaatttttaaaattatttttcttgttttcctaatttagtaac 380

                                                                       
Query: 181 ttgaatcttctctctctctttttccctatctttctctttctaaaggtcttttgatttcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgaatcttctctctctctttttccctatctttctctttctaaaggtcttttgatttcat 440

                                                                       
Query: 241 ttccttttanagtatgtaagttcaggctggtgacagttcagtggcaaagcacctcactaa 300
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttccttttaaagtatgtaagttcaggctggtgacagttcagtggcaaagcacctcactaa 500

                                                             
Query: 301 gatttgtgataactctttgtttgatccatggcattgaaaataagattcaa 350
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gatttgtgataactctttgtttgatccatggcattgaaaataagattcaa 550


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 351
Length of database: 751
Length adjustment: 9
Effective length of query: 342
Effective length of database: 742
Effective search space:   253764
Effective search space used:   253764
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no275_c06.g1 MSMg01no275_c06.g1 CHROMAT_FILE:
MSMg01no275_c06.g1 PHD_FILE: MSMg01no275_c06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:14:49 2005
         (288 letters)



>mm_chr13_77477646_77478333
          Length = 688

 Score =  555 bits (287), Expect = e-162
 Identities = 287/287 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   atctgagtaaataaggtaaagagagagaagcaacatgaatctgtcccactgacatggcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 atctgagtaaataaggtaaagagagagaagcaacatgaatctgtcccactgacatggcaa 428

                                                                       
Query: 61  acaatgtcaaatggcaaactggagctctgccatagaggaaggtacagagcatgccttcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 acaatgtcaaatggcaaactggagctctgccatagaggaaggtacagagcatgccttcca 368

                                                                       
Query: 121 tgcacgctccagaaatgcaatcactgcctgggttccatgccctggatttactgtaaagtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 tgcacgctccagaaatgcaatcactgcctgggttccatgccctggatttactgtaaagtg 308

                                                                       
Query: 181 agagagaatgaaggtaaggttggaatagtaaggtacaggcataagaacctttattatttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 agagagaatgaaggtaaggttggaatagtaaggtacaggcataagaacctttattatttc 248

                                                          
Query: 241 aaaagatcagtgtacactcatagtgcttcctcttcaaaagcactcaa 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 aaaagatcagtgtacactcatagtgcttcctcttcaaaagcactcaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


| Home | SequenceCutter | Blast | Download |