BAC Information

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BAC

Clone NameMSMg01-275D15
Chromosome13 (Build37)
Map Location 58,645,400 - 58,645,664
singlet/doubletsinglet
Overlap geneLOC100041086
Upstream geneSpock1, Klhl3, Hnrpa0, 5133401N09Rik, Ubqln1, LOC671252, Gkap1, Kif27, Hnrpk, Rmi1
Downstream geneSlc28a3, LOC100041510, LOC435361, Ntrk2, LOC100041533, Agtpbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-275D15.T7 (MSMg01no275_d15.b1)MSMg01-275D15.TJ (MSMg01no275_d15.g1)
ACCAG413739AG413740
length745750
length of high quality
(start - end)
265 (430 - 694)308 (382 - 689)
definitionCHROMAT_FILE: MSMg01no275_d15.b1 PHD_FILE: MSMg01no275_d15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:56 2005CHROMAT_FILE: MSMg01no275_d15.g1 PHD_FILE: MSMg01no275_d15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGAACTTTACGTTCACAGATGTGTCTGTCCAGTCAACTTCAGGGA
TCAGCAGCAATGACTCTTCACCCTCTATAATCACAGACAAGGTAGGGTTG
ATGTACCTTAAATCCCGATATTCCACAGAGTAAAGAACTTGCAGTTCACC
CCTGACTTAGTAGTTCCCAAGCTGCCTCTGTGAATACAGTTCACTCCCTT
CCCCCAGGCTCAAACTTCCCATTTCCTGCTGGCTGAACTTCCTCACACCT
GCCTCCAACATGGCTAACCCCTCCCACCTTGCTTCTTTAAGGACTTCAAG
GGCTCCCGTTTTCTGAGAACCCACACAAGGAAAGGGGTTGGGGGATTGGA
AGGAAAAGCCTTGTTTCCAGGGCATTTGAGAACCAAAGCCAACTGTAGCA
TCCTCCCGTTGCTAGGATACAGATAGACTCTGTATAGAGTCCCTGCCTGG
AAACAGAGAGAGGGAGACTAGCTTGCACCAGTTGCTATGGTGAGAAGGGA
AGTTCTCTCCATGCCCATTGGTTCCGGGCATGTCATGAGGCCAGAGCTAC
TTTGAGGCTAAAAGCACCTCATCGAATCACCCCGCTTTAACTTCATGCTT
AGTTGTGTGCATCCAGTCCCAGGGCCTTACAAAGATTGGTGAGGAGGGAA
AGAGGACGCTGATCAACTCTGCAGCCTGGAAAATCAAGTCTTTAG
ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCACACGTGCCAGGGCATGCACGA
GTATGTGTGCAAACATACATAACCACACAAAACTTTAAAAAAGAAAGAAA
ATGAACTGAAAATGTGTAGGGCAGCGGGTGTGGGGGAATAAAGGGAGTGG
GAGAAAACCCATGTCCTGCCGGAGTTTCAGTGCTCTGGGCGGGCAGACTC
GGAGGACTGCCGCATGCTTTCCACGTGGCACTGGGTGGGTGTCTGGCTGT
GGGGGGGCGGGGGGTGGACAAGAGGCAGTTCAAGGTCTCTGGGCCTCATG
GAGACCAGATTTATTTTGTTCTCCCCCTCCCGCATCCCAGATGCCACTGG
ACACTGCAGAAGAGCTGAGAACAAAATGAAGACCCCGGGGGCAGCTTGGT
CATTCACAGGGCCTAAGGGAGGAGAGGGCAGGAAGAGAGGGGGCACTGGG
TGGTTCCCATGCTGGTGAGAGTCCTTGGTCCGGCCTGTGGCTGGAGCACA
GGAAGGCATTCCGGGGGGAGATTACTCATGGCTGGTTAGGGGAAAGCCTA
TCCCATTTTTTAAGCACGGTAGGTCTTGATGAGCAGAGACAGTCCATGGT
TTTAGAGCTTTATTGTAGAAAGCCAGGAGGAAAGACAGAAGGCAGAAAGA
GGGAGGGAGGTTGGCCATGCCCATGTGCAGAGAGGTGCAAAGGTAGAGAG

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no275_d15.b1 MSMg01no275_d15.b1 CHROMAT_FILE:
MSMg01no275_d15.b1 PHD_FILE: MSMg01no275_d15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:14:56 2005
         (265 letters)



>mm_chr13_58645200_58645864
          Length = 665

 Score =  505 bits (261), Expect = e-147
 Identities = 264/265 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaaccaaagccaactgtagcatcctcccgttgctaggatacagatagactctgtatagag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 gaaccaaagccaactgtagcatcctcccgttgctaggatacagatagactctgtatagag 406

                                                                       
Query: 61  tccctgcctggaaacagagagagggagactagcttgcaccagttgctatggtgagaaggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 tccctgcctggaaacagagagagggagactagcttgcaccagttgctatggtgagaaggg 346

                                                                       
Query: 121 aagttctctccatgcccattggttccgggcatgtcatgaggccagagctactttgaggct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 345 aagttctctccatgcccattggttccgggcatgtcatgaggccagagctacttagaggct 286

                                                                       
Query: 181 aaaagcacctcatcgaatcaccccgctttaacttcatgcttagttgtgtgcatccagtcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 aaaagcacctcatcgaatcaccccgctttaacttcatgcttagttgtgtgcatccagtcc 226

                                    
Query: 241 cagggccttacaaagattggtgagg 265
           |||||||||||||||||||||||||
Sbjct: 225 cagggccttacaaagattggtgagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 265
Length of database: 665
Length adjustment: 9
Effective length of query: 256
Effective length of database: 656
Effective search space:   167936
Effective search space used:   167936
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)