BAC Information

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BAC

Clone NameMSMg01-275F20
Chromosome13 (Build37)
Map Location 116,166,165 - 116,166,467
singlet/doubletsinglet
Overlap genenone
Upstream geneNdufs4, LOC100040958, Fst, 4930467J12Rik, Mocs2, Itga2, LOC100040975, Itga1, Pelo
Downstream geneLOC100041023, LOC547402, LOC100041045, EG623174, Isl1, EG668276, Gm280
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-275F20.T7 (MSMg01no275_f20.b1)MSMg01-275F20.TJ (MSMg01no275_f20.g1)
ACCAG413839AG413840
length736733
length of high quality
(start - end)		310 (51 - 360)280 (81 - 360)
definitionCHROMAT_FILE: MSMg01no275_f20.b1 PHD_FILE: MSMg01no275_f20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:05 2005CHROMAT_FILE: MSMg01no275_f20.g1 PHD_FILE: MSMg01no275_f20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCAGTTTGATGATGTAAGAAGTTCAAATGTTCACCATCTCTG
GATACAAATATCATAAATTAAAACACGTCAAATCTTTTCACCTTGCACAT
GGTTCGTGGGAAACCTCCTTACGCACATTTTCTTTATTTTCGTTTAATGG
GAAGTTTCACAGGAGAAAGTGGAAATGGGAGGAATGGAGAATGAAGGTCT
AAAATCAGAGGATGATCCAGTCTAACTGTATTCAGCCTGGGATTAGGATT
AAGGAAACAGCTTTCTCGTTTTCCTTTCATTAGCAAGAATGCCACTTCTC
TACTAAAAAGGTATTTATAGTGATTTAGCGTCTAAAAGTTAAAATTAGTT
TTAAATAACTATAGGCATTACAAATGACACTCTCTAGCATAAATAAAAAT
ATCCTAAGTCAAGAGAATTGCTGGTTAATACAATTTCATACTTTTAGTAT
GATTTATTTTTTATATTATTTTAGTATATTTATATTTTGGTACATTTATC
TAATTTATATTTATATTTTATTTAATTATACTTAGATAAATATATTTAGT
ATATTTACATACTATATTATAATTTTAATGATAATTATTAATATATTTAC
ATAAATATTTAATCTTTTGCATATTATATTTATATTTTAGTATGATTTAT
TTTTATTTTACAGTGCTAGGTGTGGAACCAAGGGCC

NTTTCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTCACCTGTTTACCTGTGT
TTTCGTGTATTTCTTTCAGTGAGTCATTGATAGCATCCTTAAAGGACTCT
ATTATTTTCATGAGATAGAATTTTAGAACAGATTCCTGATTTTCAAGTGT
GTTGGTTTATTCAAGGTTTGCTGTGGTGGGAGAACTGGGTTCTGATGATG
CCCACGTATTTTGGCTTCTGTTGGTTATGGTCTTGCACTTGCCTTTTGTC
ATCTGGTTATCCCTGGTGTTTGTTGGTCTGGATGACTGTATGGAGTCTGC
CTGTTTTGTCCTTGTGTTGCTCTCCGCCTCCTGGTAGGCCTGTGACCCTG
GCTGTATCCTACCGCCTGTGAGGCCTTCCAACTGGGGGCTCTTCACAGGG
GCAGAGAAGCTGCTGATCTGTTGCCCAGGTTGCAGTAGATCTCCTGGGAG
GCCTTCAGACAACTGCTCTGAGTGCAGCTGGTCCTCTAGGGTGGATCAGG
ATATGGAGTCTTCACAGGAACAGACTAACTAGGGGTCTGCCCCAGCAGCA
AGGACTGGGTGGATGGGGTGGAAGAGACAGAAGGGGAGTGGTATTCAGCA
GGGTAGGGGTTTGGAGGGTGATGGGTCCAGATTCTTCCAGGCTCCCAGTA
GCAGCACTGGGATTCGGGAAAAAGTGTGTGTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no275_f20.b1 MSMg01no275_f20.b1 CHROMAT_FILE:
MSMg01no275_f20.b1 PHD_FILE: MSMg01no275_f20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:15:05 2005
         (310 letters)



>mm_chr13_116165958_116166667
          Length = 710

 Score =  586 bits (303), Expect = e-172
 Identities = 303/303 (100%)
 Strand = Plus / Minus

                                                                       
Query: 8   ttcagtttgatgatgtaagaagttcaaatgttcaccatctctggatacaaatatcataaa 67
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 ttcagtttgatgatgtaagaagttcaaatgttcaccatctctggatacaaatatcataaa 451

                                                                       
Query: 68  ttaaaacacgtcaaatcttttcaccttgcacatggttcgtgggaaacctccttacgcaca 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 ttaaaacacgtcaaatcttttcaccttgcacatggttcgtgggaaacctccttacgcaca 391

                                                                       
Query: 128 ttttctttattttcgtttaatgggaagtttcacaggagaaagtggaaatgggaggaatgg 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 ttttctttattttcgtttaatgggaagtttcacaggagaaagtggaaatgggaggaatgg 331

                                                                       
Query: 188 agaatgaaggtctaaaatcagaggatgatccagtctaactgtattcagcctgggattagg 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 agaatgaaggtctaaaatcagaggatgatccagtctaactgtattcagcctgggattagg 271

                                                                       
Query: 248 attaaggaaacagctttctcgttttcctttcattagcaagaatgccacttctctactaaa 307
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 attaaggaaacagctttctcgttttcctttcattagcaagaatgccacttctctactaaa 211

              
Query: 308 aag 310
           |||
Sbjct: 210 aag 208


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 710
Length adjustment: 9
Effective length of query: 301
Effective length of database: 701
Effective search space:   211001
Effective search space used:   211001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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