BAC Information

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BAC

Clone NameMSMg01-275G14
Chromosome13 (Build37)
Map Location 61,102,776 - 61,103,063
singlet/doubletsinglet
Overlap geneCtsj
Upstream geneLOC100041267, Gas1, EG328264, Dapk1, LOC218274, BC051665, 2310051M13Rik, 4930486L24Rik, Tpbpb, Ctla2a, Tpbpa
Downstream geneCtsq, Ctsr, Cts6, Cts8, Cts8-ps, LOC435362, Cts7, Cts7-ps, EG624056, LOC665717, Ctsm, Cts3, EG665401, LOC624140, EG623505, LOC665415, LOC673332, BC052688, EG638502, LOC100041382, EG633250
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-275G14.T7 (MSMg01no275_g14.b1)MSMg01-275G14.TJ (MSMg01no275_g14.g1)
ACCAG413872AG413873
length743744
length of high quality
(start - end)
319 (41 - 359)289 (71 - 359)
definitionCHROMAT_FILE: MSMg01no275_g14.b1 PHD_FILE: MSMg01no275_g14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:09 2005CHROMAT_FILE: MSMg01no275_g14.g1 PHD_FILE: MSMg01no275_g14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CTTCTTTATGCCCTCTACCATCATCATGAGATATGCTTTTAAATCCAGGT
CTACCTTTTCAGGTGTGCCCCGGTGTCCTGGATTGGGCGAAGTGGGCGTT
CTGGGTTCTGATGATGGTGAGTGGTCCTGGCTTCTGTTAGTAGGATTCTT
ACGTTTACCTTTCGCCATCTGGCAATCTCTGGAGTTAGTTGTTATAGTTG
TCTTTGTTAAGAGATTGTTCCTCTGTTGATTTTGTTACCCTCTATCAGCA
GGCGTGGGAGACAAGCTCTCTTCTCTGAGTTTCAGTGGTCAGAGCAGTCT
CTGTATTTTTGTTCTCCTCCCCCCCCCCAGGTGTACAGTTATCTGGTGTT
TGGACCTCCTCCTGGCTGAAGGTGAAGGCCCAAAACAGGATCTTTCCCAG
AAGCTGTGTTGCTTTGGCCAGGAAGGTGGCCAGTTGTCTGGAGTCGAAGA
TGTCGCCACCTCAGAAGCTCTGTGGCTCTTGTCCGGAAGGAGGCCGGCCG
TCTGGAGCTGAGGTTGGCGCCGCCTCAGAAGCTCTGTGGCTCTTGCCGGG
AAGGTGGCTGGTTGTCTGGAGCTGAAGATGGCGCCGCCCCAGAATCTCTG
CGACTCTCTCGCCCATCCCATATATGGCTGGCACTCTGTATTCCACACGG
TCACCCGTGCAGTCTGCCCTCCGCGTAGTCCCGGAGCCAAGAN
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCCCTACACCTAGGCAAGTGTTTATCAACA
AATCTATACTTCTGTTTTCTTCAGTTTTCAGTGAAAACATATATATATAT
ACATACACACACATGTACATATATTAGCCTTCTCACTAACAATTCATTTT
GCTCTTACATCTAATTGTGATTTACATCATTTCAGAGACCTGTGAAAACT
CCTCCCTATTGATGGTGGCAATGCTCACTGTCATGTATCCTTTGCATCTC
ATGTCAGCTTCCATTTCATTTCTCAGGTATTTATTATGAGCCAAATTGCA
GCAGTTTTTTTGTGAACCACGCCCCCCCGGTGGTTGGCTATGGATCTGAG
GGAGATGTGAAAGATGGTAATAACTACTGGCTGATCAAGAACAGGTATAC
TTGCCAAAAAAAAATTTTATATTTGAAATTCTAGGGGCTGAAGAGATAAT
TCAGTGTCTAAGAGTACTTGGTGCCCGTCCAGCAGATTCACAAATGGATT
ATTTCTTGCAGTCAATGTTTGAGTGTACAGCCTAGAAAACATTGTCCCAC
TTAAACTGAACAAATCTGTTCTTGTTTTCTTATGTACATGAATGAGGTAT
GTGTACATGCATATGTGCAACTGAGACATGATGTTAACATCAGTTGCCTT
ATAATAATTATCCACCTGCTATAGTGAGACAGTGTGCCTCGCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no275_g14.g1 MSMg01no275_g14.g1 CHROMAT_FILE:
MSMg01no275_g14.g1 PHD_FILE: MSMg01no275_g14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:15:09 2005
         (289 letters)



>mm_chr13_61102473_61103161
          Length = 689

 Score =  545 bits (282), Expect = e-160
 Identities = 286/288 (99%), Gaps = 2/288 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tccctacacctaggcaagtgtttatcaacaaatctatacttctgttttcttcagttttca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 tccctacacctaggcaagtgtttatcaacaaatctatacttctgttttcttcagttttca 532

                                                                       
Query: 61  gtgaaaac--atatatatatatacatacacacacatgtacatatattagccttctcacta 118
           ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 gtgaaaacatatatatatatatacatacacacacatgtacatatattagccttctcacta 472

                                                                       
Query: 119 acaattcattttgctcttacatctaattgtgatttacatcatttcagagacctgtgaaaa 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 acaattcattttgctcttacatctaattgtgatttacatcatttcagagacctgtgaaaa 412

                                                                       
Query: 179 ctcctccctattgatggtggcaatgctcactgtcatgtatcctttgcatctcatgtcagc 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 ctcctccctattgatggtggcaatgctcactgtcatgtatcctttgcatctcatgtcagc 352

                                                           
Query: 239 ttccatttcatttctcaggtatttattatgagccaaattgcagcagtt 286
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 ttccatttcatttctcaggtatttattatgagccaaattgcagcagtt 304


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)