Query= MSMg01no276_a04.b1 MSMg01no276_a04.b1 CHROMAT_FILE:
MSMg01no276_a04.b1 PHD_FILE: MSMg01no276_a04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:15:51 2005
(706 letters)
>mm_chr13_110844280_110845385
Length = 1106
Score = 1268 bits (656), Expect = 0.0
Identities = 691/704 (98%), Gaps = 4/704 (0%)
Strand = Plus / Plus
Query: 5 gaattcacacttac--actaaatacctaacagagcacataccatttgtacacaatgaatt 62
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacac--acaaactaaatacctaacagagcacataccatttgtacacaatgaatt 262
Query: 63 tcaataataataataattaataataataataataatttcacaatgtgaatacactttata 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tcaataataataataattaataataataataataatttcacaatgtgaatacactttata 322
Query: 123 gctttaaactcagacaagagcttctgtggacacaggaggagtcacaagacttgctatgca 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gctttaaactcagacaagagcttctgtggacacaggaggagtcacaagacttgctatgca 382
Query: 183 gcagtagttttcaactaaacatcacaatcacgataagaaagcattaaatattatctcaag 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gcagtagttttcaactaaacatcacaatcacgataagaaagcattaaatattatctcaag 442
Query: 243 aagagttccacagtgccatccccagaaaggagcccaaagtaccctggcacaatgtagagt 302
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 443 aagagttccacagtgccatccccagaaaggagcccaaagaaccctggcacaatgtagagt 502
Query: 303 ctttctttgtgcattgtccaatgcccttaaacaaaacccggagctacagaaaaatttgag 362
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct: 503 ctttctttgtgcattgtccgatgcccttaaacaaaacccggagctacagaaaaatctgag 562
Query: 363 tagagctctgcctggtgatgtgggattaggcaataacgccttgtggtttgggtcactggc 422
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tacagctctgcctggtgatgtgggattaggcaataacgccttgtggtttgggtcactggc 622
Query: 423 aaatgtctacgttaactgcttgaaagcagtccgtgttttgtggccgacctgaggctgctt 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 aaatgtctacgttaactgcttgaaagcagtccgtgttttgtggccgacctgaggctgctt 682
Query: 483 agctcaggggaacacaatgaatgaagtagcagcttgccttctccgcctagattggaatgc 542
|||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct: 683 agctcaggggaacacaatgaatgacttagcagcttgccttctccgcctagatcggaatgc 742
Query: 543 agagagctaagctgggcaactgtgggtttcagtctccacagttgctaattcttttgctct 602
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 743 agagagctaagctgggcaactgtgggtttcagtctccacagctgctaattcttttgctct 802
Query: 603 tccttgcattcacagagaataccctggggccttttgcatttgtgtgcttggcacagtctt 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 tccttgcattcacagagaataccctggggccttttgcatttgtgtgcttggcacagtctt 862
Query: 663 ctccctactcgattctttctggggtcatgcctgatccctacata 706
||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 863 ctccctactcgattcttcctggggtcatgcctgatccctacata 906
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 706
Length of database: 1106
Length adjustment: 10
Effective length of query: 696
Effective length of database: 1096
Effective search space: 762816
Effective search space used: 762816
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no276_a04.g1 MSMg01no276_a04.g1 CHROMAT_FILE:
MSMg01no276_a04.g1 PHD_FILE: MSMg01no276_a04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:15:51 2005
(666 letters)
>mm_chr13_111008338_111009406
Length = 1069
Score = 1224 bits (633), Expect = 0.0
Identities = 659/669 (98%), Gaps = 3/669 (0%)
Strand = Plus / Minus
Query: 1 tcgcccttaagcatgaataagagcctcatgaagtatttgtgaaaatgcagtgttcctggg 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 950 tcgcccttaagcatgaataagagcctcatgaagtatttgtgaaaatggagtgttcctggg 891
Query: 61 ctctactcccagagattctgaaaccagaaaaccaagatggcacaagaaaattaactaata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 890 ctctactcccagagattctgaaaccagaaaaccaagatggcacaagaaaattaactaata 831
Query: 121 acatactaca---tgtgtctggtcgacacactaggccacctagtcaaaccatggctccaa 177
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 830 acatactacaagctgtgtctggtcgacacactaggccacctagtcaaaccatggctccaa 771
Query: 178 gagggctactggtgcttctctgtgttagacttagaggaaagctaggtggaggcttaagtc 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 gagggctactggtgcttctctgtgttagacttagaggaaagctaggtggaggcttaagtc 711
Query: 238 caggtaggaacaagatgacccacatcctctgcagagagaaagtgtgatttctcctaagac 297
||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 710 caggtaggaacaaaatgacccacatcctctgcagagggaaagtgtgatttctcctaagac 651
Query: 298 aaacgaatgggaaactgattgtgtgtgcggtgactcagaggataatggagatggctcatg 357
|||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct: 650 aaacgaatgggaaactgattgtgtgtgcagtgactcagaggataatggagatgactcatg 591
Query: 358 gcaaatgatgcttcagacttgagacgagacatgaaaataataggaacagtgacgctggtg 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 gcaaatgatgcttcagacttgagacgagacatgaaaataataggaacagtgacgctggtg 531
Query: 418 ggacgtcagaccagagccaaagatttttctaattgcatatgaacctataaaaaaactatc 477
| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 530 gaacgtcagaccagagccaaagatttttctaattgcatatgaacctataaaaacactatc 471
Query: 478 ctaggcagacaaccaattacaattagtattgaaaaacaaaattatctgatgtttttagat 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 ctaggcagacaaccaattacaattagtattgaaaaacaaaattatctgatgtttttagat 411
Query: 538 agactatgtgatgtgtaaatgcatactagaaatagttttatacaacagttctggctgtat 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 agactatgtgatgtgtaaatgcatactagaaatagttttatacaacagttctggctgtat 351
Query: 598 gcctaatcccccttcacaccccatacttttgacagaactacagcattgtaataaccgggg 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 gcctaatcccccttcacaccccatacttttgacagaactacagcattgtaataaccgggg 291
Query: 658 caaaggaga 666
|||||||||
Sbjct: 290 caaaggaga 282
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1069
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1059
Effective search space: 694704
Effective search space used: 694704
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
