BAC Information

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BAC

Clone NameMSMg01-276E03
Chromosome13 (Build37)
Map Location 108,942,805 - 109,096,417
singlet/doubletdoublet
Overlap geneNdufa12l, Ercc8, LOC668123, LOC621498, Elovl7
Upstream geneLOC100040350, LOC100040366, Apoo, AI197445, LOC100040820, Zswim6, 3021401N23Rik, 2810008M24Rik
Downstream geneLOC668129, LOC100040524, Depdc1b, Pde4d, EG668144, LOC621663, LOC100040968
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-276E03.T7 (MSMg01no276_e03.b1)MSMg01-276E03.TJ (MSMg01no276_e03.g1)
ACCAG414492AG414493
length728741
length of high quality
(start - end)		312 (45 - 356)280 (77 - 356)
definitionCHROMAT_FILE: MSMg01no276_e03.b1 PHD_FILE: MSMg01no276_e03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:10 2005CHROMAT_FILE: MSMg01no276_e03.g1 PHD_FILE: MSMg01no276_e03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:10 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,096,110 - 109,096,417)(108,942,805 - 108,943,084)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCTGGTACACATAATAATGCATACAACTTCACATGCCTCATAACAT
CTGAAATCTCCACCCACAGGCAACAGGACAGCAGGGAAAGTGCCTCTGTT
CCTATACCAGTGGGTCCATTTGTGTGGTGCAGCCCACTATTGGGTTTAGT
CAAAGGAATTGAAATCAGTGTGTAGGAGGGATGGCTGCACACTTCCCAGG
TTTATTACAGCATCATGCCCGATAGCCCAATGTGGAATCAGCCTCAGTGT
TCAGCAGTGGGTGAATGATGGGTGAACTTTTACATATATATAAAGGAAGC
CAGGTACTTTTTATACAAACACCCTCCCTCACTCATTTGAGGAAGCTAAA
AGTCTAACTACATTGCAATAGAGAGCAGAACAAAAATCAAGAGGTGAGGA
TGGGTAGGTGGGAGGGAGGAGATATTTNTTCCCCTCCCCCTCCCCTCCCC
TCCTTTTTCTCCCCACCCTTTTTTTTTTTTGTTTTTCTTTCCTTTCCTTT
TCTCTTTTCTCCTTCCTTCTTCTCCTATCTTTTTTTTTTTAATTTACCAC
GTTATCATAGTTATAACCTTTTTATATATTACATATCACGTTTTTTATTT
TCTTATCCCTTTTATTATTATCGCGTTTCCTCGGTAATCGTTTTTGCCAC
AAATCATGTCTCTATTTTTTTATTTTTG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTGGAGACACTTGTGACCTCATTT
AACAATAGACACAACCCAGATTGCCAACCTCCCACAATTAGTTTCCATTG
CAGCTCAAAGGTCCCACGCTCCCCGGGTAGGGAAACCAGGAGTCGATTAC
AGCTTCTTAGGTTCATTTAAAGCCACAGCAAGGGACTGGCATGGGTGACT
GTCAACACACGCCATCCTCACGTTTTGTTGTTGAAAATGTGATAGACACA
TGTTCAGGGCCAACAATGGGTCTGTCCTCCTGTGACAGAATACAGTTAGT
ACTTAAGGATTTGTACCTTGCCNATCGNTGCCCGGAATTCAGGAAACAAT
AAAAAACAAAATCTTGTAGGAAAAAATAAAGACAGAAAAGTATGACTGCT
GTCCCCTGTCCATATTGTGTATTCCAGTTTTTCTTCTATTTTCATTATGT
GTTTTTGGGTTGGTGGGCTGGGCTGGGTTGGGCTGGTACTCTGAATTTTT
TATCCAAGAAATAGGTATATTAAAGCAATCCACGTCTTTGTTTCATCCGC
CCATGTGCCCCTTTTTATCCCTGCTTTCTATCCTAGTCACGAACAATTAG
CTAATCAAATACTGTTCTAGAACAACCACCCCCCACCTTTCCGCCAACCC
ACTTTCAATCCTCTTCTATAATAATAAATAACCCCGATGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no276_e03.b1 MSMg01no276_e03.b1 CHROMAT_FILE:
MSMg01no276_e03.b1 PHD_FILE: MSMg01no276_e03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:16:10 2005
         (312 letters)



>mm_chr13_109096081_109096791
          Length = 711

 Score =  536 bits (277), Expect = e-157
 Identities = 301/309 (97%), Gaps = 2/309 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctggtacacataataatgcatacaacttcacatgcctcataacatctgaaatc 64
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 gaattctctgggacacataataatgcatacaacttcacatgcctcataacatctgaaatc 278

                                                                       
Query: 65  tccacccacaggcaacaggacagcagggaaagtgcctctgttcctataccagtgggtcca 124
           |||||||||||| |||| |||||  |||||||||||||||||||||||||||||||||||
Sbjct: 277 tccacccacaggtaacatgacag-tgggaaagtgcctctgttcctataccagtgggtcca 219

                                                                       
Query: 125 tttgtgtggtgcag-cccactattgggtttagtcaaaggaattgaaatcagtgtgtagga 183
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 tttgtgtggtgcagccccactattgggtttagtcaaaggaattgaaatcagtgtgtagga 159

                                                                       
Query: 184 gggatggctgcacacttcccaggtttattacagcatcatgcccgatagcccaatgtggaa 243
           ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct: 158 gggatggctgcacacttcccaggtttattacagcaccatgcctgatagcccaatgtggaa 99

                                                                       
Query: 244 tcagcctcagtgttcagcagtgggtgaatgatgggtgaacttttacatatatataaagga 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98  tcagcctcagtgttcagcagtgggtgaatgatgggtgaacttttacatatatataaagga 39

                    
Query: 304 agccaggta 312
           |||||||||
Sbjct: 38  agccaggta 30


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 711
Length adjustment: 9
Effective length of query: 303
Effective length of database: 702
Effective search space:   212706
Effective search space used:   212706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no276_e03.g1 MSMg01no276_e03.g1 CHROMAT_FILE:
MSMg01no276_e03.g1 PHD_FILE: MSMg01no276_e03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:16:10 2005
         (280 letters)



>mm_chr13_108942605_108943284
          Length = 680

 Score =  489 bits (253), Expect = e-143
 Identities = 274/281 (97%), Gaps = 2/281 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctggagacacttgtgacctcatttaacaatagacacaacccagattgccaacctcccaca 60
           ||||||||||||||||  ||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 201 ctggagacacttgtgatgtcatttaactatagacacaacccagattgccaacctcccaca 260

                                                                       
Query: 61  attagtttccattgcagctcaaaggtcccacgctccccgggtagggaaaccaggagtc-g 119
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 261 attagtttccattgcagctcaaaggtcccacgctccccgggtagggaaaccaggagtctg 320

                                                                       
Query: 120 attacagcttcttaggttcatttaaagccacagcaagggactggcatgggtgactgtcaa 179
            |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 -ttacagctgcttaggttcatttaaagccacagcaagggactggcatgggtgactgtcaa 379

                                                                       
Query: 180 cacacgccatcctcacgttttgttgttgaaaatgtgatagacacatgttcagggccaaca 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 cacacgccatcctcacgttttgttgttgaaaatgtgatagacacatgttcagggccaaca 439

                                                    
Query: 240 atgggtctgtcctcctgtgacagaatacagttagtacttaa 280
           ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 440 atgggcctgtcctcctgtgacagaatacagttagtacttaa 480


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 680
Length adjustment: 9
Effective length of query: 271
Effective length of database: 671
Effective search space:   181841
Effective search space used:   181841
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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