BAC Information

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BAC

Clone NameMSMg01-277A19
Chromosome13 (Build37)
Map Location 80,266,866 - 80,267,231
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666925, LOC382780
Downstream geneEG666933, Arrdc3, LOC666964, LOC100043074, LOC218368, LOC666979, EG666984, Gpr98
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-277A19.T7 (MSMg01no277_a19.b1)MSMg01-277A19.TJ (MSMg01no277_a19.g1)
ACCAG415058AG415059
length752752
length of high quality
(start - end)
296 (457 - 752)366 (387 - 752)
definitionCHROMAT_FILE: MSMg01no277_a19.b1 PHD_FILE: MSMg01no277_a19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:07 2005CHROMAT_FILE: MSMg01no277_a19.g1 PHD_FILE: MSMg01no277_a19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTAAAACTGTTCCAAATCTTCAGCAAAGTAGCTGGATATAAAATT
AACTCATACAAATCAGTGGTCTTCCCCTACACAAAGGATAAATAGGCTGA
GACAAAAATTAGGAAAACAACACTTTTCACCATAGTCACAAAGGATATAA
AGTACCTTGTTGTGAGTCTACCTAAGGAAGTGAAAGATCTGTATGTTAAG
AACTTCAAGTCTCTGTAGAAAGAAATCAAAGAAGGTCTCAGAAGATGGAA
AGATCTCCCATGCTTATGCATTGACAGTTTTAATAGAGTAAAAATGGCCA
TCTTGCTGAAAGCAATCNATGACTCTCTGNACTNNCATCAAAATTCCAAC
TCAATTCTTCATTGTGTTAGAAAGAGCAAAAATCAAAAAATCTGGGATAA
CGGAAAACCTAGGATACTGAAAACTATTCTCAACAAAGAAAGAACATCTG
GTGGAATCATCATCCCTGTCCTCAAGCTGTACTGCAGAGCAATTGTGATA
AAAACTAAATGGTATTGGTACAGTGAAAGGCAGGTAGATCAATGGAGTAG
AATTTAAGACCCAGAAATGAACCCACACACATTTGGTAACTTGATCTTTG
ACAAAGGAGCAAAAACTATTGGGTGGAAAAAAGACAGCATTTTTGATATA
TGGTACTGGCTCAACTGGTGATTAGTATGTAGAAGAATGAAAATCAACCT
GT
ACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATTCTTGTGTAAGCTCGGTGTTGTCAC
CTTCACACTCCCTCACACTTGTCCCAAAACAAATTATATGCATCCTTAGG
CTACTAAGTGTTTCACTCAAATATCTTCATTATTTCTACAGAAAGAGAAT
TTACATATATATGTTATGTATATTAAAATATTAAATACAGAAACTTAAAT
ATTGAAAGATTATATTTTCCATTAACAATTTATTGCTGCAAATCAAATGA
AAATATTATCACTTATTACAAAGTATTCTTTTAAGTGACTCTTCCTGGGC
CTGACCTGTAATTGAATACNCTCCTGNACGGGCCATTAAGAGCACAAACA
GCATCTACAGCCATCTGCTTTCTTCCTCATACACAAACTTTGGTCCAGAT
ATGAATAGTACTGACAGATTGCCTCAGTCTGCTGCATGGAAAGGGCCTCT
CATCTAACAGCCTTAGTCAACCACGTTATTTATGTTAGTGTATGCAGAAA
TACATCGAACTCTTAAATACTAAGTATTCTATATGTTAAAACTGACTTAA
AAAATCAAAGCTTCTAGGAGAAATTCAGTGTGTATTAAAATATAGTCAGA
CCAGGTCTTTAGGTTTACAGGATTTTAAAAATGAAGAGGATCCACTAAAA
GACAGCTTTAAGTGGATTTTACATGGTAACAAATAAAAAATTAATGAGTT
AT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no277_a19.g1 MSMg01no277_a19.g1 CHROMAT_FILE:
MSMg01no277_a19.g1 PHD_FILE: MSMg01no277_a19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:17:07 2005
         (366 letters)



>mm_chr13_80266666_80267431
          Length = 766

 Score =  692 bits (358), Expect = 0.0
 Identities = 364/366 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   taagagcacaaacagcatctacagccatctgctttcttcctcatacacaaactttggtcc 60
           |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 566 taagagcacaaacagcatctacagccatctgctttcttcctcttacacagactttggtcc 507

                                                                       
Query: 61  agatatgaatagtactgacagattgcctcagtctgctgcatggaaagggcctctcatcta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 agatatgaatagtactgacagattgcctcagtctgctgcatggaaagggcctctcatcta 447

                                                                       
Query: 121 acagccttagtcaaccacgttatttatgttagtgtatgcagaaatacatcgaactcttaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 acagccttagtcaaccacgttatttatgttagtgtatgcagaaatacatcgaactcttaa 387

                                                                       
Query: 181 atactaagtattctatatgttaaaactgacttaaaaaatcaaagcttctaggagaaattc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 atactaagtattctatatgttaaaactgacttaaaaaatcaaagcttctaggagaaattc 327

                                                                       
Query: 241 agtgtgtattaaaatatagtcagaccaggtctttaggtttacaggattttaaaaatgaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 agtgtgtattaaaatatagtcagaccaggtctttaggtttacaggattttaaaaatgaag 267

                                                                       
Query: 301 aggatccactaaaagacagctttaagtggattttacatggtaacaaataaaaaattaatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 aggatccactaaaagacagctttaagtggattttacatggtaacaaataaaaaattaatg 207

                 
Query: 361 agttat 366
           ||||||
Sbjct: 206 agttat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 366
Length of database: 766
Length adjustment: 9
Effective length of query: 357
Effective length of database: 757
Effective search space:   270249
Effective search space used:   270249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)