This page provides previous versions of nucleotide polymorphisms of MSM/Ms and JF1/Ms strains, corresponding to GRCm38 coordinate by Liftover from GRCm37.
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RIKEN MSM/Ms Mouse BAC clones & Library
BAC clone ordering.
BAC Information
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Search Result
BAC
Clone Name
MSMg01-277A19
Chromosome
13 (Build37)
Map Location
80,266,866 - 80,267,231
singlet/doublet
singlet
Overlap gene
none
Upstream gene
LOC666925
,
LOC382780
Downstream gene
EG666933
,
Arrdc3
,
LOC666964
,
LOC100043074
,
LOC218368
,
LOC666979
,
EG666984
,
Gpr98
Link
Open Mouse BAC browser
Click to get alignment info.
name
LOC666925
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:666925
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 9 Proteins
pseudo
: _no_value
name
LOC382780
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:382780
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 Proteins
pseudo
: _no_value
name
EG666933
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:666933
MGI:3644592
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 ESTs, 6 Proteins
pseudo
: _no_value
name
Arrdc3
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:105171
MGI:2145242
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
LOC666964
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:666964
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST
name
LOC100043074
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:100043074
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST
name
LOC218368
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:218368
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins
pseudo
: _no_value
name
LOC666979
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:666979
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 26 mRNAs, 3358 ESTs, 18 Proteins
pseudo
: _no_value
name
EG666984
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:666984
MGI:3644365
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA
name
Gpr98
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:110789
MGI:1274784
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Arrdc3
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:110611936
GeneID:105171
MGI:2145242
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: arrestin domain containing 3
transcript_id
: NM_001042591.1
name
LOC666964
(CDS detail)
type
mRNA
link
vega
ensembl
NCBI
xref
GI:94395360
GeneID:666964
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST
product
: hypothetical LOC666964
transcript_id
: XM_987269.1
name
LOC100043074
(CDS detail)
type
mRNA
link
vega
ensembl
NCBI
xref
GI:149264406
GeneID:100043074
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST
product
: hypothetical protein LOC100043074
transcript_id
: XM_001479447.1
name
EG666984
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:94395362
GeneID:666984
MGI:3644365
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA
product
: predicted gene, EG666984
transcript_id
: XM_987474.1
name
Gpr98
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:142382865
GeneID:110789
MGI:1274784
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: G protein-coupled receptor 98
transcript_id
: NM_054053.3
name
Arrdc3
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:110611937
GeneID:105171
MGI:2145242
definition
GO_component
: GO:0005575 - cellular_component [Evidence ND]
GO_function
: GO:0003674 - molecular_function [Evidence ND]
GO_process
: GO:0008150 - biological_process [Evidence ND]
codon_start
: 1
product
: arrestin domain containing 3
protein_id
: NP_001036056.1
name
LOC666964
(CDS detail)
type
CDS
link
vega
ensembl
NCBI
xref
GI:94395361
GeneID:666964
definition
codon_start
: 1
product
: hypothetical protein
protein_id
: XP_992363.1
name
LOC100043074
(CDS detail)
type
CDS
link
vega
ensembl
NCBI
xref
GI:149264407
GeneID:100043074
definition
codon_start
: 1
product
: hypothetical protein
protein_id
: XP_001479497.1
name
EG666984
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:94395363
GeneID:666984
MGI:3644365
definition
codon_start
: 1
product
: hypothetical protein
protein_id
: XP_992568.1
name
Gpr98
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:70909294
GeneID:110789
MGI:1274784
definition
GO_component
: GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence NAS] [Evidence IEA]
GO_function
: GO:0005509 - calcium ion binding [Evidence NAS] [Evidence IEA]; GO:0004930 - G-protein coupled receptor activity [Evidence NAS] [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA]
GO_process
: GO:0007154 - cell communication [Evidence IEA]; GO:0016337 - cell-cell adhesion [Evidence NAS]; GO:0007275 - development [Evidence IEA]; GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA]; GO:0007399 - nervous system development [Evidence NAS]; GO:0007218 - neuropeptide signaling pathway [Evidence IEA]; GO:0050896 - response to stimulus [Evidence IEA]; GO:0007605 - sensory perception of sound [Evidence IMP]; GO:0007165 - signal transduction [Evidence IEA]
codon_start
: 1
exception
: mismatches in translation
note
: neurepin; very large G protein-coupled receptor 1
product
: monogenic, audiogenic seizure susceptibility 1
protein_id
: NP_473394.2
name
LOC666925
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:666925
definition
number
: 1
pseudo
: _no_value
name
LOC382780
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:382780
definition
number
: 3
pseudo
: _no_value
name
LOC382780
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:382780
definition
number
: 2
pseudo
: _no_value
name
LOC382780
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:382780
definition
number
: 1
pseudo
: _no_value
name
LOC218368
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:218368
definition
number
: 2
pseudo
: _no_value
name
LOC218368
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:218368
definition
number
: 1
pseudo
: _no_value
name
EG666933
(CDS detail)
type
misc_RNA
link
vega
ensembl
MGI
NCBI
xref
GI:149264360
GeneID:666933
MGI:3644592
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 ESTs, 6 Proteins
product
: predicted gene, EG666933
pseudo
: _no_value
transcript_id
: XR_001945.2
name
LOC666979
(CDS detail)
type
misc_RNA
link
vega
ensembl
NCBI
xref
GI:149264363
GeneID:666979
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 26 mRNAs, 3358 ESTs, 18 Proteins
product
: similar to gamma actin-like protein
pseudo
: _no_value
transcript_id
: XR_033873.1
clone name
MSMg01-163B18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-324O21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-510D16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-507B12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-401C24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-333I08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-406M05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-341M12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-317M05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-199H09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-120P21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-154C02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-188F20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-483O04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-452C23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-538J14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-340P23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-142D22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-142B22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-150P18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-499D13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-479D09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-359B03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-132D12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-381K22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-203C21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-170D20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-237H13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-396G14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-538B15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-273C09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-475D20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-163E13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-444C20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-124M19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-476E20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-263B22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-138I01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-270D14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-054I20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-145G23
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-262N13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-208K20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-418H02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-525D17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-319M18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-353E07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-422D20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-179P11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-449I24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-533J03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-277A19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-300I13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-170A02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-455J15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-119P13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-146M18
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-507K19
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-540J12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-523F06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-523F08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-544A13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-380B24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-150G03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-320G16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-401P12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-394D21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-336K11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-214B23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-439F04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-402H20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-334A17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-389H09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-412P14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-370M21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-329K09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-436L08
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-260M10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-407O16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-345F12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-131B13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-089I08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-181N22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-419D16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-055C22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-490D22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-494I11
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-131G04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-454B13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-537K08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-086K19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-514N23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-050N21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-340P17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-064C04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-481F24
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-293N05
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-312K21
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-174L10
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-143L01
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-285M12
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-239J12
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-210M20
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-319P04
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-232N17
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-167O18
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-123D19
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-309K18
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-030J09
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-028F02
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-293L03
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-201K08
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-257L07
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-110G12
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-219N20
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-257L21
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-038I09
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-290D12
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-334C10
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-022A07
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-219C17
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-293A02
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-087G16
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-324C08
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-204C18
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-046M03
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-172K04
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-305F08
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-350F23
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-083H15
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-202H05
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-348J02
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-303D10
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-320M11
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-200I18
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-276C21
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-077H22
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-176D04
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-015J11
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-151F03
singlet/doublet
doublet
plural/unique
unique
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