BAC Information

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BAC

Clone NameMSMg01-277C23
Chromosome13 (Build37)
Map Location 76,872,343 - 77,018,984
singlet/doubletdoublet
Overlap geneMctp1
Upstream geneEll2, LOC666786, Glrx, Rhobtb3, LOC666553, LOC622313, Spata9, Rfesd, LOC100043008, Gpr150, Arsk, AK129128, Gm276, LOC666603
Downstream geneEG666607, Ankrd32, 2210408I21Rik, LOC631139, LOC675063, D13Mgi7, 1110033M05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-277C23.T7 (MSMg01no277_c23.b1)MSMg01-277C23.TJ (MSMg01no277_c23.g1)
ACCAG415157AG415158
length752752
length of high quality
(start - end)		368 (385 - 752)364 (389 - 752)
definitionCHROMAT_FILE: MSMg01no277_c23.b1 PHD_FILE: MSMg01no277_c23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:16 2005CHROMAT_FILE: MSMg01no277_c23.g1 PHD_FILE: MSMg01no277_c23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,018,617 - 77,018,984)(76,872,343 - 76,872,705)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGAACTGATTGATACTGAATGGTAAAAAAAGTACCTAAAGAAATGT
TCAACATCCTCAGTTGTCATGGAACCGCAAATCAAAGGAACCCTGAGATT
CCACCTCAAACCAGTCAGAATGGCTAAGTTCAGGTGACAGCAGATACTGG
CAAGGATCTGGAGAAAGAAGAACACTCCTCCATTGCTGGTGGGATTGCAA
GCTGGTACAACCACTCTGGAAATCAGTCTGGCAGTTCCTCAGAAAATTGG
ACAGAGTACTACCTGAGGACCCAGCAATACCACTCCTGGGCATATACCCA
GGAGATGCTCCAACATGTAATAAGGACACATGCTCCACTATTTTCATAGC
AGTCTTGTTTATAATAGCCAGAAGCTGGAAAAAACCCAGATGTCCTTCAA
CAGAGGAATGGATACAGAAAATTGAGAGCACTTCTTATCTTGTAAGTTCT
TAACTTACTAGCAAGCAAAATGATTTTCTTAAGTGTGAACATGAATTTAA
GGATAATCTCAAGCTAGTTTATATCCCCTCCATGTTTCTAAGGTTTCAGA
AGTGCTGTGAAGGGTCAAAGTACTCAATTACACACAATTATCTTTTAAAG
GTTTAAAGAAATGAATCTGCTAGCATCACCATTTGTGAAGCAGGTTGTTG
GTCAATCCCCCTTCTTGTGTATGTAAATGCTGTGTCTAGGTACACACATT
CT

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTGTGGTCTCATTAAGCAAAATA
AAGCTTCAAAGACTTTTAAAGAAATGTTCTATTGTTTGCCTTTGGAACTG
TGCTTCAGAACTAATAATATATTAAAAGAATGTTGATTTTAAAATATGTG
TAAGACTTTCCTCATCCTGTGTTTCTATGATGATATATTTGTGTAAAACC
CTGCTAACCCACAGTTAGCAGAATTACCTCTTTCAAATGAGTTTAACTAG
GACTAGATATTATATAGTATTTGGAATTAATTAGTATGAATAATCTATTT
TATTGAAATATGAAAGATTTTTTATAACCCCCCCCCCCACTGTGTATATT
GACAGCCACCTGAGATCTCAGCACTTAAGAGGGAGAAGGAAGTCCAGCTT
GGGCTCAAGAAGAAGACCTATTCTAACATATATTCAGGAAGATAAGTTGG
TAGGTAGATAGGTAGATTGATAGATAGATAGATGATAGATAGAGTCTAAG
ACATTTAACTTCTTTAAAATAATCTTAATAATACAGTACAAATAAATCCA
CATAATTTCCTTGAACCTATAAAAATTTAACTGAATAATACATATATTAT
TTCCTTTATTTTATATTTAAACTTCTTAGTACTTTATACTTAATTATTAA
TTTAAACTTTGGAGGTTTGCCACTATAGATGCAAAATGCCTGTGTCTACT
TN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no277_c23.b1 MSMg01no277_c23.b1 CHROMAT_FILE:
MSMg01no277_c23.b1 PHD_FILE: MSMg01no277_c23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:17:16 2005
         (368 letters)



>mm_chr13_77018329_77019096
          Length = 768

 Score =  712 bits (368), Expect = 0.0
 Identities = 368/368 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccactattttcatagcagtcttgtttataatagccagaagctggaaaaaacccagatgtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 ccactattttcatagcagtcttgtttataatagccagaagctggaaaaaacccagatgtc 597

                                                                       
Query: 61  cttcaacagaggaatggatacagaaaattgagagcacttcttatcttgtaagttcttaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 cttcaacagaggaatggatacagaaaattgagagcacttcttatcttgtaagttcttaac 537

                                                                       
Query: 121 ttactagcaagcaaaatgattttcttaagtgtgaacatgaatttaaggataatctcaagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 ttactagcaagcaaaatgattttcttaagtgtgaacatgaatttaaggataatctcaagc 477

                                                                       
Query: 181 tagtttatatcccctccatgtttctaaggtttcagaagtgctgtgaagggtcaaagtact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 tagtttatatcccctccatgtttctaaggtttcagaagtgctgtgaagggtcaaagtact 417

                                                                       
Query: 241 caattacacacaattatcttttaaaggtttaaagaaatgaatctgctagcatcaccattt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 caattacacacaattatcttttaaaggtttaaagaaatgaatctgctagcatcaccattt 357

                                                                       
Query: 301 gtgaagcaggttgttggtcaatcccccttcttgtgtatgtaaatgctgtgtctaggtaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 gtgaagcaggttgttggtcaatcccccttcttgtgtatgtaaatgctgtgtctaggtaca 297

                   
Query: 361 cacattct 368
           ||||||||
Sbjct: 296 cacattct 289


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 768
Length adjustment: 9
Effective length of query: 359
Effective length of database: 759
Effective search space:   272481
Effective search space used:   272481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no277_c23.g1 MSMg01no277_c23.g1 CHROMAT_FILE:
MSMg01no277_c23.g1 PHD_FILE: MSMg01no277_c23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:17:16 2005
         (364 letters)



>mm_chr13_76872143_76872906
          Length = 764

 Score =  694 bits (359), Expect = 0.0
 Identities = 362/363 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgtgtatattgacagccacctgagatctcagcacttaagagggagaaggaagtccagc 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 actgtgtatattgacagccacctgagatctcagcacttaagagggtgaaggaagtccagc 260

                                                                       
Query: 61  ttgggctcaagaagaagacctattctaacatatattcaggaagataagttggtaggtaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgggctcaagaagaagacctattctaacatatattcaggaagataagttggtaggtaga 320

                                                                       
Query: 121 taggtagattgatagatagatagatgatagatagagtctaagacatttaacttctttaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taggtagattgatagatagatagatgatagatagagtctaagacatttaacttctttaaa 380

                                                                       
Query: 181 ataatcttaataatacagtacaaataaatccacataatttccttgaacctataaaaattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ataatcttaataatacagtacaaataaatccacataatttccttgaacctataaaaattt 440

                                                                       
Query: 241 aactgaataatacatatattatttcctttattttatatttaaacttcttagtactttata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aactgaataatacatatattatttcctttattttatatttaaacttcttagtactttata 500

                                                                       
Query: 301 cttaattattaatttaaactttggaggtttgccactatagatgcaaaatgcctgtgtcta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cttaattattaatttaaactttggaggtttgccactatagatgcaaaatgcctgtgtcta 560

              
Query: 361 ctt 363
           |||
Sbjct: 561 ctt 563


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 364
Length of database: 764
Length adjustment: 9
Effective length of query: 355
Effective length of database: 755
Effective search space:   268025
Effective search space used:   268025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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