BAC Information

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BAC

Clone NameMSMg01-278D21
Chromosome13 (Build37)
Map Location 112,945,509 - 112,945,735
singlet/doubletsinglet
Overlap genenone
Upstream gene4732495G21Rik, LOC100040640, EG621953, Gpbp1, LOC100040666, Mier3, Map3k1, LOC668181, LOC100040716
Downstream geneLOC100041161, LOC100041175, Ankrd55, LOC100040725, Il6st, Il31ra, LOC100041240, Ddx4, 9130023D20Rik, Ppap2a, LOC100041282, Skiv2l2, Dhx29, LOC667756, Ccnu, EG622408, EG622422, 2310016C16Rik, Cdc20b, Gzma, 1700084D21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-278D21.T7 (MSMg01no278_d21.b1)MSMg01-278D21.TJ (MSMg01no278_d21.g1)
ACCAG415919AG415920
length751743
length of high quality
(start - end)
69 (75 - 143)234 (130 - 363)
definitionCHROMAT_FILE: MSMg01no278_d21.b1 PHD_FILE: MSMg01no278_d21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:18:31 2005CHROMAT_FILE: MSMg01no278_d21.g1 PHD_FILE: MSMg01no278_d21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:18:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCGTTGAGGGGCGCG
GAATTCCTATACTCTGCGTACAGAGGTCAGAAGTCCCCTTTTTCTTCTTT
CTTTCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTACTTACT
TACTTACTTACTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTCT
CTCTCTCTCTCTCTCTCTGTCTCGCTCTCTTTCTTGCGTTCTTTCTTTCT
TGTTCTTTTGGTTTCTAGAGACAGGGTTTCTCTGTATAGCTCTGGTTGGC
CTGGAAATCACATTGTAGACTATGTTGGCCTCGAACTCACAAATCCGCCT
GCCTCTGTCTCCTTTGTGCTCACAACACAGGCGTGCGCCGCTACGCCCGG
GGGGTTCCTATTTTCTTTACTCCTCACTAAGAGACGACACCGTGGATCAC
TAGTCTTCTCCTAGCCGCCATCACCCAGGTTTCTGGCCGGGGTTGATTAC
CCGGGCCGGGTGTTATACTGGCTAGCACTGTTGAGGCTGGGAAAGAAGGC
CCGATCACAGGGGATTGATAAGGACCAACAATGGCCTCTGGGTTTCGGAG
GTGTGAGGGGGGACGGTCCCACATAAGCTGGAGAGGGCGCGGGTGGAAAA
AGATAAGTTTCGGCGCATCATGGTGACCCCCACTCGGCGCCTCCTTAGTG
AATATTTTTTGGCTTATTTCCTCGCCGCTATATTTTTTTTTTTCCGGCCT
C
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGTTCTTAATTTTTTGAAAGTTGT
AGCTTTATAAACTTCAGAATTCTGCCGCGTGTGACAGGCATACTGTGGTG
ACTGAGAAAAGCACGGTGTCATACGCCTCTGGAAATAGCGCCCCAGAATA
ACTCAGTTAGGGTCTGTAATGTCATGCAGAGTATTTTGAACCTTTCCACC
CATGGGTGCATTAAGAGAAAAGCATCAACAGGAGCTGGCATTTTGTAAGC
CATGAAGCAAGCCAAGAATAGGGTCAGCTACAGGCAACATAACTAAACAA
CTTTCTAAATGGTATTTTTTGTTTGACCACGCTCTACTCTCCTTCCGAAC
CAGTCCTCCTTATAGCCACCAGCATTTGAAATCCTTGCAAACTTTCAAGT
CAGGAAGCAGTTCCAACACAAAGGGGAACTTGGACGAAATGTATCCGTGG
GAAAAGACCATTTCGTTTTTTTGTGTCCTAGAAGGATAGGGCACGGTGTG
CTTTGTACTTTTGTGGCATTATCAATCATCATCATCGTCGTCATCGTCAT
CGTCATCATCATCATCCACCTCTTAAATCACAATGGGAAACTGGAATTTC
ATGGGAATATAGGGGCACATTTGCCCCATATGTTTCTTGGCTATTCCTAG
CTAATTAGCTTCCAGCGTGCAAAGTACACTAGGGTCTATTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no278_d21.g1 MSMg01no278_d21.g1 CHROMAT_FILE:
MSMg01no278_d21.g1 PHD_FILE: MSMg01no278_d21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:18:31 2005
         (234 letters)



>mm_chr13_112945307_112945940
          Length = 634

 Score =  408 bits (211), Expect = e-118
 Identities = 223/227 (98%)
 Strand = Plus / Minus

                                                                       
Query: 3   tgacaggcatactgtggtgactgagaaaagcacggtgtcatacgcctctggaaatagcgc 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 tgacaggcatactgtggtgactgagaaaagcacggtgtcatacgcctctggaaatagcgc 370

                                                                       
Query: 63  cccagaataactcagttagggtctgtaatgtcatgcagagtattttgaacctttccaccc 122
           ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct: 369 cccagaataactcagttagggtctgtaatgtcatgcagaatattttgtacctttccaccc 310

                                                                       
Query: 123 atgggtgcattaagagaaaagcatcaacaggagctggcattttgtaagccatgaagcaag 182
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 309 atgggtgcattaagagaaaagcatcaacaggagctggcattttgtaaaccatgaagcaag 250

                                                          
Query: 183 ccaagaatagggtcagctacaggcaacataactaaacaactttctaa 229
           |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 249 ccaagaatagggtcagctacaggcaacagaactaaacaactttctaa 203


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)