BAC Information

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BAC

Clone NameMSMg01-278O23
Chromosome13 (Build37)
Map Location 7,095,767 - 7,095,984
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039388, LOC100039395, Pitrm1, Pfkp, LOC100039532
Downstream geneLOC667611, EG623516, LOC791083
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-278O23.T7 (MSMg01no278_o23.b1)MSMg01-278O23.TJ (MSMg01no278_o23.g1)
ACCAG416436AG416437
length689696
length of high quality
(start - end)
645 (45 - 689)218 (434 - 651)
definitionCHROMAT_FILE: MSMg01no278_o23.b1 PHD_FILE: MSMg01no278_o23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:19:24 2005CHROMAT_FILE: MSMg01no278_o23.g1 PHD_FILE: MSMg01no278_o23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:19:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACAGAATCCGCGGAA
TTCATGAAATTCTTACGCACATGGGTGGAACTAGAAAATATCATCCTGAG
TGAGGTAACCCAGTCACAAAACAACATACATGGTATGCCCTTACTGATAA
GTGGATATTAGCCCAAAAGCTCCAAACATCCAAGATACAATTCAGAGACC
ACATGAAGCTCAAGAAGAAGGAAGACCAAAGTGTGGGTGTATAGGGACTT
CTTAGAAGGGGAACAAAATATTCACAGGAGTAAAGATGGAGATAAAGTGT
AAAGCAGAGACTAAAGGAAAGACTATCCAGAAACTGCCCTACCTGGGGAT
TTATCCAGTATACTATTACCAAATCCAGACACTATTGTGGATGCCAAGAA
GTGCATGCTGAAAGGAGTCTGACATGGCTGTCTTCTGAGAGGCCCTGCCA
GAGCCTTACAAATATAGAGACAGATGCTCACAGCCAACTGTTGCTTTAAG
TGCAGAGTCCCCAATAGAGGAGATAGAGAAAGGACTACAGGAGTTAAAGG
GGTTTGCAACCCTATAGGAAGAACAACAATATCAAGCAATGAGACACCCC
AGAGCTTCCAGGGACTAAGCCATCAACCGAGGTGTACACATGGCTCCAGC
TGCATATATACCAGAGGAAGGCCTTGTCAGGTATCAATN
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTAGGAACACACTGGCTGGCTAGCTG
AGCTGAACTCATGAGCATGACCCTACACATAAAGCATTAAACACACACAC
ACACACACACACACACACACACACACACACACACACACACACACACACAC
ACAGGTTGCCAAAAGTTTCTTTTCAACCANGCTGCTCCAAGAATATTGCT
ACCTCCTAGAAGACTCTGAACTCAGACTGGAAAATGATTCTCCAGCTCAG
GAACATGTACAAAAAGCACATGGTGCGGTCTCCTCTGGTCTTAAGAGATG
CTCTCTTCTCTTTTATTATCCCCCCCCCCCCCACACACTTTCATGTAACA
GCACTGCCTGGAGATTAGCTACATCATTGACATGCCTTTGATAAGGAGGG
CACTTTTACTTAGTATCCTCTTGAAAGGATAAGGAATTGCCTTCCTCCTC
TACCCTGGTCCCTAATTTCACGCTGCCTGGGCTTCTGCTGAATGTTCTCT
TTCTCCTGCACACTAATTGCTTAGTTCCTAATAATTGATATCTTACAGAG
GCGCTGGGTAAATTAACTGGCCAATGTTCAAGAAAGGATGTGATCCCCAG
AGAGAAGATGACACAAAATGAGAGTTTCATTTAGCATTGGCACTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no278_o23.g1 MSMg01no278_o23.g1 CHROMAT_FILE:
MSMg01no278_o23.g1 PHD_FILE: MSMg01no278_o23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:19:24 2005
         (218 letters)



>mm_chr13_7095567_7096184
          Length = 618

 Score =  398 bits (206), Expect = e-115
 Identities = 215/218 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcctttgataaggagggcacttttacttagtatcctcttgaaaggataaggaattgcctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcctttgataaggagggcacttttacttagtatcctcttgaaaggataaggaattgcctt 260

                                                                       
Query: 61  cctcctctaccctggtccctaatttcacgctgcctgggcttctgctgaatgttctctttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctcctctaccctggtccctaatttcacgctgcctgggcttctgctgaatgttctctttc 320

                                                                       
Query: 121 tcctgcacactaattgcttagttcctaataattgatatcttacagaggcgctgggtaaat 180
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 321 tcctgcacactaattgcttagttcctaataattgatatcttacagaggtgctgggtaaat 380

                                                 
Query: 181 taactggccaatgttcaagaaaggatgtgatccccaga 218
           ||| ||| ||||||||||||||||||||||||||||||
Sbjct: 381 taattggtcaatgttcaagaaaggatgtgatccccaga 418


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 218
Length of database: 618
Length adjustment: 9
Effective length of query: 209
Effective length of database: 609
Effective search space:   127281
Effective search space used:   127281
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)