Query= MSMg01no280_b11.b1 MSMg01no280_b11.b1 CHROMAT_FILE:
MSMg01no280_b11.b1 PHD_FILE: MSMg01no280_b11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:51 2005
(706 letters)
>mm_chr13_89478262_89479368
Length = 1107
Score = 1321 bits (683), Expect = 0.0
Identities = 698/703 (99%), Gaps = 1/703 (0%)
Strand = Plus / Minus
Query: 5 gaattcttgacttgtggccaaagaccatcagcagtgaaacatgaatgtataggcttaatt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 907 gaattcttgacttgtggccaaagaccatcagcagtgaaacatgaatgtataggcttaatt 848
Query: 65 cagatcttgggaatcatcagacagctgggtgaaggttacgcttttccctctgtacactaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 847 cagatcttgggaatcatcagacagctgggtgaaggttacgcttttccctctgtacactaa 788
Query: 125 agaacacgaacaaatggctttacgagtgcataattcacagtgtattatatcagtcagcct 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 agaacacgaacaaatggctttacgagtgcataattcacagtgtattatatcagtcagcct 728
Query: 185 gaaaaat-aaaaaaaatgtttataacggtttggctagaattattctgtagactgaagtgc 243
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 727 gaaaaataaaaaaaaatgtttataatggtttggctagaattattctgtagactgaagtgc 668
Query: 244 ctcaggggtaacagagcatgaagagcccactgctaatgactggtctctttcctacacact 303
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 667 ctcaggggtaacagagcatgaagagcccactgctaatgactggtctcttttctacacact 608
Query: 304 catcaagcatgcctgagccctgtgcccagccttgggctcgtgggggcactatgatgctga 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 catcaagcatgcctgagccctgtgcccagccttgggctcgtgggggcactatgatgctga 548
Query: 364 gcaaaaggggcagcaactgggtttacagtgaccagaagagagcatgagttaatgttggat 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 gcaaaaggggcagcaactgggtttacagtgaccagaagagagcatgagttaatgttggat 488
Query: 424 cacaaaagaggattgcctgaagtggctcttaggctgctgttgctcagtggagcaatttaa 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 cacaaaagaggattgcctgaagtggctcttaggctgctgttgctcagtggagcaatttaa 428
Query: 484 taacgtaggcagaaagccatgctttgggcaatcgctgcctcaatactggatatgccagct 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 taacgtaggcagaaagccatgctttgggcaatcgctgcctcaatactggatatgccagct 368
Query: 544 tctgggattttctgatgtatggcttacagcaaagtcttcctagctcactaaagtccctgc 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 tctgggattttctgatgtatggcttacagcaaagtcttcctagctcactaaagtccctgc 308
Query: 604 ctaaatgtggctgcctgacccctattcagcctgcttaatactctcccaattgaactcctt 663
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 307 ctaaatgtggctgcctgacccctatccagcctgcttaatactctcccaattgaactcctt 248
Query: 664 ctcttctcttcagtttttaaaggagtatttcaacattttgtta 706
||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 247 ctcctctcttcagtttttaaaggagtatttcaacattttgtta 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 706
Length of database: 1107
Length adjustment: 10
Effective length of query: 696
Effective length of database: 1097
Effective search space: 763512
Effective search space used: 763512
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no280_b11.g1 MSMg01no280_b11.g1 CHROMAT_FILE:
MSMg01no280_b11.g1 PHD_FILE: MSMg01no280_b11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:51 2005
(513 letters)
>mm_chr13_89427016_89427928
Length = 913
Score = 911 bits (471), Expect = 0.0
Identities = 498/507 (98%), Gaps = 1/507 (0%)
Strand = Plus / Plus
Query: 1 atgtaaactttgggtggggggtgggaaaaattaacaaagaatctcaagttctctattcac 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 atgtaaactttgggtggggggtgggaaaaattaacaaagaatctcaagttctttattcac 260
Query: 61 tgtttgccattggaatatgtggtgcttttgtgacttctctaggtatctatttcttcatgt 120
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 261 cgtttgccattggaatatgtggtgcttttgtgtcttctctaggtatctatttcttcatgt 320
Query: 121 gtaaagagaaaatataatatagtatgtggccaatcaaagcaccaagtgtgtggtgcccag 180
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtaaagagaaaatacaatatagtatgtggccaatcaaagcaccaagtgtgtggtgcccag 380
Query: 181 gaacactcctggacagtatgagcagcatccattcccaggatagcatgtttgcccttcaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaacactcctggacagtatgagcagcatccattcccaggatagcatgtttgcccttcaac 440
Query: 241 atccttccttcactaatggggtattttagatgacattacacattgataataattctttct 300
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 441 atccttgcttcactaatggggtattttagatgacattacacattgataatatttcattct 500
Query: 301 gaaatattttcatgaacattcacaaacaagcagggacattcttttatcttcatcaatcat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaaatattttcatgaacattcacaaacaagcagggacattcttttatcttcatcaatcat 560
Query: 361 ttatatttagcttactatctttaatggatcactcaaatgaaaaactacatacaaatttaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttatatttagcttactatctttaatggatcactcaaatgaaaaactacatacaaatttaa 620
Query: 421 atacacttacacacgtatacattgtataaatgctgtgtgtgtgtgtgtgagtgtgtgtgt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atacacttacacacgtatacattgtataaatgctgtgtgtgtgtgtgtgagtgtgtgtgt 680
Query: 481 gtgtgagtgtgtgtgtgtngtgtgtgt 507
||||| |||||||||||| ||||||||
Sbjct: 681 gtgtgtgtgtgtgtgtgt-gtgtgtgt 706
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 63
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 913
Length adjustment: 10
Effective length of query: 503
Effective length of database: 903
Effective search space: 454209
Effective search space used: 454209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
