BAC Information

Click to search

BAC

Clone NameMSMg01-280G04
Chromosome13 (Build37)
Map Location 103,808,846 - 103,809,156
singlet/doubletsinglet
Overlap geneMast4
Upstream geneCd180
Downstream geneEG621312, EG432800, LOC432801, LOC100040045, Ppia-ps13_1282.1, Sfrs12, Erbb2ip, LOC100040086, D130037M23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-280G04.T7 (MSMg01no280_g04.b1)MSMg01-280G04.TJ (MSMg01no280_g04.g1)
ACCAG417492AG417493
length732777
length of high quality
(start - end)
316 (46 - 361)105 (431 - 535)
definitionCHROMAT_FILE: MSMg01no280_g04.b1 PHD_FILE: MSMg01no280_g04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:21:12 2005CHROMAT_FILE: MSMg01no280_g04.g1 PHD_FILE: MSMg01no280_g04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:21:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTCATTGTGAGACAAGCTAGGTGGTGATTTTCTAAGTCATTGAAT
AGGCTCTGGTGAATGCAATTCGCCCTGTAGAGTTCTGTGTACCTTTTTAA
AAGGCTTAAATTCAGAGCATTATACCTTGCCTGGTTGTTTCGAAAAGTCA
TTTGGATAAAATGAGGTTATTTCCAGAATTCAGGGAGAGAGAATCACCTT
GGTTTTGCAATAGATTTGAAAAAGATTTGTGAGATCTCCAGCAAGACGAA
GGCAACGTTTCTGGAAAGAGAATAAAGAGGTTTTAATTCAAGCAAAATAA
AAGGCATGCTTTCCATTCCCGCCTATGTCTTAACCCAAATTTATTTTCTC
TATAGCACCCTCTACCCTCCCTCTCGAAAAAATAAATAAAGCAAGAATTT
AGAATATCTACTGTCAAAGCCAAATAGAAGGCCAGTGTCATGTTGAACGT
TAGAAATCCAAAAACAAAATGAAGGGTGAAAAAAAATAAAAAATCTAGTG
CCGCGTCTGACTTAGCATTTACAGTGGCATGCTTATATAAAGAGAGAGCG
AGCGTCGCAATATATCCCAGAGTACATATAGGGATGTGGGCTTGGATAAT
GTCAGCTACATTTATATATTTCCGTATTACCCAGCGTGGCACTTGGCTTT
TCTTTCTCAGCGTGATTTTGTTTGCCCTGCAG
CTTTTTCCCCCCGGCCATTTGGAGACCCTTCCCNNCCCTCCCNCCCACCN
NNCCCACTATGATGTGGGTAGCCTGGCGGCCGCCTGGTTCGGCACCGCGG
GNGAACNANANAAGTTACGCAGAGGGACCAGGNAGNAANGACAGGNNGAG
CCCNGGNGGNCNNCNAGANGNCACCAGCCAGGGAAGAAGNGGGGACNAGC
CNCCCAAAGGCANCCGGAAGGGAAAGNNGNGACNAGCCCCNCAAAGGCAC
CCGGAACGGAGANNCCCCNCCAANAACCAGGACNNCACGGANACAGAGNA
ANNAGAGTTCNAGNACCAGAGACCANCCCCCCCCNANGGAACAGGNCCCA
AGCCCAACCAGAGAGCCGTTTTTTTTTTTTAGNNGCACANGGCTCTACTT
TACCCGTAGGGTTATCATGCCCTGCTGGTCTTTGGCATGGTTCACAGGCA
CCACAGTTGGGGAGGACCCTGCTTGCTTCCCTCCTTGAAAGCTTGCATGG
AACCTTCTGGTAGCATGAGGGCTAGCTAGGGAGCACTGTACAAGAGGAGC
CCCCCAGAGTGGAAGAGGCATATCAGGCAGCTTGCTGTGAGATTGTATCT
CCCAGCAGCGTCTGAATCTACACCCATATATTCTCCCCAATGTGACTGTC
CCTCTAGATTATCCCCTATGCTCGCGCCCAAGTGGTTGTGAAAAAGCCCT
CGAGGCCCTTTTTTTTTTCCGACAACCGCTACCCCCTGACAATAGCCTTC
CCCGCCTTACGTAGTCTTTCACGTCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no280_g04.b1 MSMg01no280_g04.b1 CHROMAT_FILE:
MSMg01no280_g04.b1 PHD_FILE: MSMg01no280_g04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:12 2005
         (316 letters)



>mm_chr13_103808643_103809358
          Length = 716

 Score =  563 bits (291), Expect = e-165
 Identities = 306/311 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcctcattgtgagacaagctaggtggtgattttctaagtcattgaataggctctg 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 ggaattcctcattgtgagacaagctaggtggtgattttctaagtcattgaataggctctg 455

                                                                       
Query: 64  gtgaatgcaattcgccctgtagagttctgtgtacctttttaaaaggcttaaattcagagc 123
           ||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 gtgaatgcaattcgttatgtagagttctgtgtacctttttaaaaggcttaaattcagagc 395

                                                                       
Query: 124 attataccttgcctggttgtttcgaaaagtcatttggataaaatgaggttatttccagaa 183
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 attatgccttgcctggttgtttcgaaaagtcatttggataaaatgaggttatttccagaa 335

                                                                       
Query: 184 ttcagggagagagaatcaccttggttttgcaatagatttgaaaaagatttgtgagatctc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 ttcagggagagagaatcaccttggttttgcaatagatttgaaaaagatttgtgagatctc 275

                                                                       
Query: 244 cagcaagacgaaggcaacgtttctggaaagagaataaagaggttttaattcaagcaaaat 303
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 274 cagcaagacgaaggcaacgtttctggaaagagaagaaagaggttttaattcaagcaaaat 215

                      
Query: 304 aaaaggcatgc 314
           |||||||||||
Sbjct: 214 aaaaggcatgc 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)