BAC Information

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BAC

Clone NameMSMg01-280L10
Chromosome13 (Build37)
Map Location 68,934,121 - 69,088,639
singlet/doubletdoublet
Overlap geneAdcy2, LOC666205
Upstream geneBC048507, LOC666185, LOC100042687, LOC100042692, LOC674779, LOC677603, LOC100042124, LOC666222, AA414992, LOC666238, EG666245, EG666272, LOC100042223, Mtrr, LOC100042233, Fastkd3, 1700001L19Rik
Downstream geneLOC218332, Pols, A530095I07Rik, Srd5a1, Nsun2, LOC100042260, 3110006E14Rik, 4930547H16Rik, Med10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-280L10.T7 (MSMg01no280_l10.b1)MSMg01-280L10.TJ (MSMg01no280_l10.g1)
ACCAG417737AG417738
length766758
length of high quality
(start - end)
238 (128 - 365)138 (137 - 274)
definitionCHROMAT_FILE: MSMg01no280_l10.b1 PHD_FILE: MSMg01no280_l10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:21:37 2005CHROMAT_FILE: MSMg01no280_l10.g1 PHD_FILE: MSMg01no280_l10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:21:37 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,934,121 - 68,934,358)(69,088,502 - 69,088,639)
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTCATCAGAGACAAGCATTATGGAGCTAAGGGATTTTTATCATGA
GACCGAGGTATAATAACCAGTATGCCCATATACATAGACAAATGAATTTA
ACATGAGTTTAATGGGAGGCAAAAATATTTTAAAATATCCACAAGATTTG
CCAGTACTAGCGGTGAGACCCTGCTGTTCTCACCTAGAACCATGCCCAGC
ACAAATGCTGTTCAACAGATATTTACTAAACAGACGAGCTGATGTTTCCA
GTTTGAAAACTAAAAACCTGATTATTATTCTCAAATTTATACACAAAGAG
AAGTCCAGGGCCAATACTTAAGTGATACGCCTTCCTCCCAACACCAAAAA
TACATTTTGATGAAATTTATAGACGATGTTAATTTAATACAACTTAGCAC
AGTATCTATATTTGGACTATGGTCCATAGAAAATATGGTGGCCAGTGATA
CAGAAGAAGAACTCAGAGTTCACAGCCAGATACAGCGATTGTCACTTTCT
GTGACACTCGGACCTTGCGATGGTGAATCTCCACTATCCGCTTGACTGGA
CATGAAATCAGCATGGAAATGCACAGCTGGGTGTGTCTGCAGGGCTTTCC
AGCAAGGTGACTGACAATGAAAGAGCTAATTTGAATGTTGATGAGACCAC
ACTGTGTACTTGGGCCCCCGAAAGCATAAAACAATACATACATACATAAG
AGCAAGCTGAGCGCCG
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACCATGAGTGGATGAAGTGTTTGCTCAT
TGGTGATCTGTTAAATGTTTAGGCCATAGGGAACGAAGGGGTAACAGGTG
TGTTCATTGCCCAAAAGGTGTAGGGACTTACTGCCAGTCAATTGAGAGCT
TCAGTTAATGCCGGTATGTTTAAGTTACTGAAGTAAGACATACAGGTTGA
TATGTGTATGCTCTGTTAACTGTGTGTCCCCATAAGCAATATACTCTGAA
ATGTTACTGCAATCATCTTCACATAGATAAATGTGAAGCTTGCTGTGATT
TTTAAAGTTTAATTAAATAAGTTTACGCCACCACTGCTTATTCATGCTGT
AAAACTTACTGTGCCTTCTACTGTTTTTAAAACAAACTTTTATGTTTATC
ATAAACTGTTGCATGCAGTAATTCATGAATCGTTTGTGGCCTAAGAAAAA
TAATCCATTGTTTTCCATATTAATATTCATGTTGCATAACGTGTCTGCAT
GAAAGATGGGATTCCGTTCCTGCTTTTGCTGAAGGTGGATAAGACCCTGC
CTAGTCAGACTGAATTTTTAAAGGAGTCTTTGTTTCTTTAATTTAGCAAG
ATTAGATCACTTTCCTTTGCTGACCATTTGCTCCTATACGAGCGGAATTC
TCAGTGTTGGGCTTCTCACTGCTTAACAGTATCTGAGTCAATACACTTTT
GAAATACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no280_l10.b1 MSMg01no280_l10.b1 CHROMAT_FILE:
MSMg01no280_l10.b1 PHD_FILE: MSMg01no280_l10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:37 2005
         (238 letters)



>mm_chr13_68933921_68934558
          Length = 638

 Score =  445 bits (230), Expect = e-129
 Identities = 236/238 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atatacatagacaaatgaatttaacatgagtttaatgggaggcaaaaatattttaaaata 60
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 atatacatagacaaatgaatttaacatgagtttaatgggaggtaaaaatattttaaaata 260

                                                                       
Query: 61  tccacaagatttgccagtactagcggtgagaccctgctgttctcacctagaaccatgccc 120
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tccacaagatttgccagtagtagcggtgagaccctgctgttctcacctagaaccatgccc 320

                                                                       
Query: 121 agcacaaatgctgttcaacagatatttactaaacagacgagctgatgtttccagtttgaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agcacaaatgctgttcaacagatatttactaaacagacgagctgatgtttccagtttgaa 380

                                                                     
Query: 181 aactaaaaacctgattattattctcaaatttatacacaaagagaagtccagggccaat 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aactaaaaacctgattattattctcaaatttatacacaaagagaagtccagggccaat 438


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space:   144041
Effective search space used:   144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no280_l10.g1 MSMg01no280_l10.g1 CHROMAT_FILE:
MSMg01no280_l10.g1 PHD_FILE: MSMg01no280_l10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:37 2005
         (138 letters)



>mm_chr13_69088302_69088839
          Length = 538

 Score =  267 bits (138), Expect = 2e-76
 Identities = 138/138 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggggtaacaggtgtgttcattgcccaaaaggtgtagggacttactgccagtcaattgag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 aggggtaacaggtgtgttcattgcccaaaaggtgtagggacttactgccagtcaattgag 279

                                                                       
Query: 61  agcttcagttaatgccggtatgtttaagttactgaagtaagacatacaggttgatatgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 agcttcagttaatgccggtatgtttaagttactgaagtaagacatacaggttgatatgtg 219

                             
Query: 121 tatgctctgttaactgtg 138
           ||||||||||||||||||
Sbjct: 218 tatgctctgttaactgtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 138
Length of database: 538
Length adjustment: 8
Effective length of query: 130
Effective length of database: 530
Effective search space:    68900
Effective search space used:    68900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)