BAC Information

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BAC

Clone NameMSMg01-280P14
Chromosome13 (Build37)
Map Location 34,087,742 - 34,088,086
singlet/doubletsinglet
Overlap genenone
Upstream geneSerpinb9, Serpinb9b, Serpinb1b, LOC628301, Serpinb9c, Serpinb9d, Serpinb9e, Serpinb9f, OTTMUSG00000000724, Serpinb9g, LOC100041370, EG619715, LOC382743, OTTMUSG00000000712, LOC193403, Vmn2r-ps94, OTTMUSG00000000720, Serpinb6c, Serpinb6a, Nqo2
Downstream gene4930482L21Rik, Ripk1, Bphl, Tubb2a, LOC100042686, Tubb2b, 2310047M15Rik, 3110004L20Rik, LOC620132, EG666666, 1300014I06Rik, D0H6S2654E, EG432746, LOC666677, Prpf4b, 4933417A18Rik, LOC666697, 1810022C23Rik, Peci
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-280P14.T7 (MSMg01no280_p14.b1)MSMg01-280P14.TJ (MSMg01no280_p14.g1)
ACCAG417924AG417925
length733732
length of high quality
(start - end)
317 (46 - 362)350 (383 - 732)
definitionCHROMAT_FILE: MSMg01no280_p14.b1 PHD_FILE: MSMg01no280_p14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:21:57 2005CHROMAT_FILE: MSMg01no280_p14.g1 PHD_FILE: MSMg01no280_p14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:21:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCATGTCCCCCTTCTTACCACCAAGAGCACTGCATAGACACAATGT
GGGCGAAACAGTCCATACACATAATATAAAATAAATCTTTAAAAAATTAT
GTTAGCCAGGCGTGCGGTGGCACATGCTTTTAATCTCAGTCCTTCGCATG
CAGAGGCAGGTGGATCTCTAAGAATTCTAGGTCAACCTGGTCTACAGAGT
GAACTCTAGGACAACCAGGGCTATCCAGAGAAACCCTGTCTGGAAAAAAA
CAAAACAAAACAAAACAAAACAAAGCAAACAAACCAAAAACCCACAAGTT
GGCAATTACATGTTTTGTGACACCCACCACCCTCAGACCCTCTCTGGAAT
GTCTAGGCCTCAGAGCAACCACATGAGGGAGATGTACACACAGAGCTTCA
GTTCTCAGCCTGTGGGTGGTAATCCCTTTGACAACACGAGGGTTAGAAAG
GTTGAGAATCAGTGATGTGCAGGAGCAGAATAGGTTAAGAAACTTGCCTC
TGGACCCTCACAGGTTAGTAGGGAGTTGGCCCTGGGATTCCTGACATAAA
GCTGAGCGACTTATAATTATAAATTATTCACATGTATATACTTTATAGTA
TCTGGGGCTTGGAAATTGAAGTAACAAGGGGTTATGTGTTTTTCCTGGCC
CTGAACACGCAGGCACCCAGGTCCTGGTCTCCA
CGAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAATCGTTCCTCTAGCTCTGAGAAAT
AAACCACATCTAGACCCCTGCTCATCAACAATACTTATTAAGAACTATTT
ATTATCAGAGAAATGAAGCCAAAACTGGAAATAAGATATATTGCCCTCAA
AGTAATAAAAATCTATGCCTCACACCAGAAAAATTTTAATAGCTACATGA
TAGTATCGTCTAGGGGGTATTTTGAGACCTGACTAACTGCATCATTTTGG
ATGGAGTCAAAGGCAAATCTTTTGAATGACGTTTCCTATGGTATGACAAA
TGACCACCTATTTATTGATGACACCCCCCCCGCCCAGTATCTCACAAAGT
ACAATAAAGGATGGGAAACACAGGAGAAAAAAAGGCATTAATCCAGGTGG
AACATCTGTTCTACTCAGAAGGTAAAATTGGTTAGGAGTTCTAAGAACTA
ATTTTGAAGAAATTAGGAACATCAAGCTTTCACCACAAGAAACTTCCTCT
TCTACTTTTCCACCACAATTTGAACTTGACACAATAAGAAATCAGAAACC
CTGTAGATATCAAATTGCAGGAAAAATGATATTCTGTACATTTTGTCTTC
ACACTGAGGAGGGGTTCCTTTTTAATAAACTGGTATTTAATTTTCTCTCA
AGAACATTTAGTGTTATTAACTCATAGGGGGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no280_p14.g1 MSMg01no280_p14.g1 CHROMAT_FILE:
MSMg01no280_p14.g1 PHD_FILE: MSMg01no280_p14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:57 2005
         (350 letters)



>mm_chr13_34087541_34088287
          Length = 747

 Score =  582 bits (301), Expect = e-170
 Identities = 336/351 (95%), Gaps = 9/351 (2%)
 Strand = Plus / Plus

                                                                       
Query: 2   ccagtatctcacaaagtacaataaaggatgggaaacacag--gagaaaaaaaggcattaa 59
           ||||||||||||||||||||||||||||||||||||||||  | |  ||||||||| |||
Sbjct: 202 ccagtatctcacaaagtacaataaaggatgggaaacacagatggg--aaaaaggcaataa 259

                                                                       
Query: 60  -tccaggtggaacatctgttctactcagaaggtaaaattggttaggagttctaagaacta 118
            |||||||||||    ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 260 ttccaggtggaa----tgttctactcagaaggtgaaattggttaggagttctaagaacta 315

                                                                       
Query: 119 attttgaagaaattaggaacatcaagctttcaccacaagaaacttcctcttctacttttc 178
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 316 attttgaagaaattaggaacatcaagctttcaccacaaaaaacttcctcttctacttttc 375

                                                                       
Query: 179 caccacaatttgaacttgacacaataagaaatcagaaaccctgtagatatcaaattgcag 238
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 376 caccacaatttgaacttgacacaataagaaatcagaaaccctgtagatatcaaattacag 435

                                                                       
Query: 239 gaaaaatgatattctgtacattttgtcttcacactgaggaggggttcctttttaataaac 298
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 436 gaaaaatgatattctgtacattttgtcctcacactgaggaggggttcctttttaataaac 495

                                                              
Query: 299 tggtatttaattttctctcaagaacatttagtgttattaactcataggggg 349
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 tggtatttaattttctctcaagaacatttagtgttattaactcataggggg 546


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 350
Length of database: 747
Length adjustment: 9
Effective length of query: 341
Effective length of database: 738
Effective search space:   251658
Effective search space used:   251658
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)