BAC Information

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BAC

Clone NameMSMg01-288A13
Chromosome13 (Build37)
Map Location 84,187,681 - 84,187,968
singlet/doubletsinglet
Overlap genenone
Upstream geneMef2c, LOC100043111, LOC623241, LOC432789, 2810049E08Rik, LOC100043119, LOC667081
Downstream geneLOC667101, Tmem161b, LOC666795, LOC667111, LOC382786, LOC100042841, LOC100042851
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-288A13.T7 (MSMg01no288_a13.b1)MSMg01-288A13.TJ (MSMg01no288_a13.g1)
ACCAG417969AG417970
length746747
length of high quality
(start - end)
634 (42 - 675)288 (73 - 360)
definitionCHROMAT_FILE: MSMg01no288_a13.b1 PHD_FILE: MSMg01no288_a13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:22:01 2005CHROMAT_FILE: MSMg01no288_a13.g1 PHD_FILE: MSMg01no288_a13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:22:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTTGTTTATATCTGTACTCCATTAGATTAGCTCTGTACCCCATAGGGCT
ATTTGCTTTTCTGGAGTCTCACTTCTTGAGTTCTTTGTATATATATATTG
GATATTAGCCCTCTATCAGATTTAGGATTGGAAAAGATATTTTCCTTTGC
ACAATGAACTACTATGCGCTATTGAAAACAATGAATTTATAAAATTCTTA
GACAAATGGATGGATCTGGAGGATATCATCCCAATTGAGGTAACCCAATC
ATAAAAGAACACACCTGGTATGCACTCACTAATAAGTGGATATTAGCCCA
GAAGCTCTCTTGCACGCGCCTGACTCGCCAGCAAGAACGATGCCACAATA
GGATCCTTCTGCACATGTTTATTGGGAGAGCTTGATTGCAGAGGTGAAGA
GACCCTGAGCCTAGAAATGGTGCTGCTTATATAGGCCTAGGAGTGACGTG
TCCATACCTGATTGGTTATGCTACCAGTACCTCATTAATATGCGTCGGGC
CAGGCAGTGACTCAGCAAAAAAACTCTTATGCCCATGCGCACATTGGTTG
TTTACCCATAATCATGGGCGGTAGCCAGTGGTAGCCAGTGTCATCTTGTT
TTTTTTTTTTTTTTTTTTTGGNTTGGTTTTGGNAATGGCGTTTGTGGCTT
CCCACAAAGCTCAGAATACCCAAGATACAATTTGCAAAACACATGG
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCAATCAAAATACATGGGGGAAGACTGAA
GACAATCTCTCTACATTCATATGTCAGCAAAACAGACTTAACATTCAGTG
GATAGCATATTGATGTGCCTGATATTACCCAAAGAATAGATGTTTTCTGC
CTTGACACATTATGGTTTAAATGTATTGATCTGATTTTTAACAGACATAA
TTAAAATTAATAGAAACATTCTAAACACTACTTAGAATGAGCTACTTATT
AATTTTTTTCATACCCTCTCTTCGTTTTTGGCCAGAGGTGGTCCTCACGC
ATCATAGAGTACTTTTCATAACCACCCGCCCCGCCAAAGCATGTTGTTGA
GCCTGGGCATGGGTTTCTAACGCTCTTGAGCTGAGATTCAGTGAACACTT
CCATTTGGAGCTCTCTGTACACTTAGGACTATGTCCTCCTCTGCCCTTGG
TCTTTTTCCAGAACGGAGTCCCGCCAACAGAAAGACAGAATCAGCATCTC
TCCTATTCCTTTTCACTTTTCCCAATAGCTGCTTTGCTTTTTGTATTCTT
CTTCTCCCCTCTTTTTGATTAGAAAGGTGATTTTATTGGCAAGCTAAAGA
ACAATAAACCACTGTATGAGAGCAGTGTAATCCAGGTATGTATGGTGTGA
CTCAGGCTCTTATTTGTTTGTTTGTTTGCTTGTCTGTTTGTTTATGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no288_a13.g1 MSMg01no288_a13.g1 CHROMAT_FILE:
MSMg01no288_a13.g1 PHD_FILE: MSMg01no288_a13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:22:01 2005
         (288 letters)



>mm_chr13_84187481_84188168
          Length = 688

 Score =  557 bits (288), Expect = e-163
 Identities = 288/288 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   caatcaaaatacatgggggaagactgaagacaatctctctacattcatatgtcagcaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 caatcaaaatacatgggggaagactgaagacaatctctctacattcatatgtcagcaaaa 429

                                                                       
Query: 61  cagacttaacattcagtggatagcatattgatgtgcctgatattacccaaagaatagatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 cagacttaacattcagtggatagcatattgatgtgcctgatattacccaaagaatagatg 369

                                                                       
Query: 121 ttttctgccttgacacattatggtttaaatgtattgatctgatttttaacagacataatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ttttctgccttgacacattatggtttaaatgtattgatctgatttttaacagacataatt 309

                                                                       
Query: 181 aaaattaatagaaacattctaaacactacttagaatgagctacttattaatttttttcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 aaaattaatagaaacattctaaacactacttagaatgagctacttattaatttttttcat 249

                                                           
Query: 241 accctctcttcgtttttggccagaggtggtcctcacgcatcatagagt 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 accctctcttcgtttttggccagaggtggtcctcacgcatcatagagt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)