BAC Information

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BAC

Clone NameMSMg01-289P20
Chromosome13 (Build37)
Map Location 100,817,933 - 100,818,249
singlet/doubletsinglet
Overlap geneBdp1
Upstream geneLOC100039797, Zfp366, Ptcd2, Mrps27, Mtap1b, Cartpt, Mccc2
Downstream geneSerf1, Smn1, Naip2, Birc1-rs1, Naip5, Birc1c-ps1, Birc1f, EG667838, Naip1, Gtf2h2, Ocln, LOC667861, Marveld2, Rad17, Taf9, Ccdc125, Cdk7, Mrps36, Cenph, Ccnb1, Slc30a5, LOC619865, LOC619917, EG619937
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-289P20.T7 (MSMg01no289_p20.b1)MSMg01-289P20.TJ (MSMg01no289_p20.g1)
ACCAG419392AG419393
length717720
length of high quality
(start - end)
321 (48 - 368)291 (78 - 368)
definitionCHROMAT_FILE: MSMg01no289_p20.b1 PHD_FILE: MSMg01no289_p20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:25 2005CHROMAT_FILE: MSMg01no289_p20.g1 PHD_FILE: MSMg01no289_p20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:25 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
ACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTACTTAACTCATTTACCTTTAGACATTTGACATGCTATTATTA
ATCCTGAATAAATTAAAGGTATTTATTCCTTTGCATTGCATTTACAAGTA
TAATATTAACAGACTCAAGAAGGGCACCTCCTCTTGGCAGATGTGTCATA
ACAGGACTTGAACTGTCTTCTACATCATTACTACAGTCTAGCGAACTCCT
GATTCTGTTTCAAATGACTCAAAGTGTTGTAAATACCTATTCAACCAGCT
AAACGACTAAGAATCAAATGAGAACAGGAAACTCTAAAGCTCAGAGTGGG
ACCAGAAGGCAACAGGTATTTATAGGACGCCAAGCATGCTCTTCTGTTTC
ATACCTGCTTCATTAGAATGACCACACAGGGGGTTTTTCCCCCTAAATTT
TTGAAACAGGGTTTCTCTGTGCAGCCCTGGCTGTCCTAGAACTTGCTCTG
TACATCAGGCTAGTCTCAAATTCAGAGACCCATCTGCTGCTGCCTCTCTG
TCGATCTGCCTCTGCCTCCTGAGTGCTGGGACTAAAGGCATGTGCCATCA
CCAAACAAAAGAAACAAAACAAACCCAAGAATGGGGCATACTGTAGCTAT
AGAATGACTACTTATCATGAGAGGCCAGGGAGTGGATAGTAGAANAAAAG
ACAGAAGTGAGAACGGT
CACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGC
AGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGC
AAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAG
ATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGG
AACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGA
AATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGAT
CCAGCAATACCTCTCCTGTTTTTATATCCACACCACGCCCCAACTGGTAA
GAAGGACACATGCTCCACTATGCCCACACCAGCCTTATTTATAATAGCCA
GAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAA
ATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGA
ATTTATGAAATTCCTAGCCAAATGGATGGACCTGNAGGGCATCATCCTGA
GTGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATA
AGGGGATATTAGCCCCAAACCTAGGATACCCAAGATATAAGATACATTTT
GCTAAACACATGAAACTCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no289_p20.b1 MSMg01no289_p20.b1 CHROMAT_FILE:
MSMg01no289_p20.b1 PHD_FILE: MSMg01no289_p20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:25 2005
         (321 letters)



>mm_chr13_100817729_100818449
          Length = 721

 Score =  582 bits (301), Expect = e-171
 Identities = 313/317 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctacttaactcatttacctttagacatttgacatgctattattaatcctgaataa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctacttaactcatttacctttagacatttgacatgctattattaatcctgaataa 264

                                                                       
Query: 65  attaaaggtatttattcctttgcattgcatttacaagtataatattaacagactcaagaa 124
           ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 attaaaggtagctattcctttgcattgcatttacaagtataatattaacagactcaagaa 324

                                                                       
Query: 125 gggcacctcctcttggcagatgtgtcataacaggacttgaactgtcttctacatcattac 184
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 325 gggcacctcctcttggcagatgtgttataacaggacttgaactgtcttctacatcattac 384

                                                                       
Query: 185 tacagtctagcgaactcctgattctgtttcaaatgactcaaagtgttgtaaatacctatt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tacagtctagcgaactcctgattctgtttcaaatgactcaaagtgttgtaaatacctatt 444

                                                                       
Query: 245 caaccagctaaacgactaagaatcaaatgagaacaggaaactctaaagctcagagtggga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 caaccagctaaacgactaagaatcaaatgagaacaggaaactctaaagctcagagtggga 504

                            
Query: 305 ccagaaggcaacaggta 321
           ||||||||| |||||||
Sbjct: 505 ccagaaggccacaggta 521


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)