Query= MSMg01no290_d07.b1 MSMg01no290_d07.b1 CHROMAT_FILE:
MSMg01no290_d07.b1 PHD_FILE: MSMg01no290_d07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:41 2005
(519 letters)
>mm_chr13_98787270_98788188
Length = 919
Score = 868 bits (449), Expect = 0.0
Identities = 492/519 (94%), Gaps = 24/519 (4%)
Strand = Plus / Plus
Query: 1 taaactgcttctgtgatttcatgtggttttctatatgattagaaaactatagcaacacat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taaactgcttctgtgatttcatgtggttttctatatgattagaaaactatagcaacacat 260
Query: 61 aaatggcatatagctggaaggattatgtctaaagttaaaatgagtacttttcaattttgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaatggcatatagctggaaggattatgtctaaagttaaaatgagtacttttcaattttgt 320
Query: 121 agcctttgatttggagaataaattaaatatttttcttaaatggatgggtacacctataag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agcctttgatttggagaataaattaaatatttttcttaaatggatgggtacacctataag 380
Query: 181 aataaattaacaaaaaaacaaaaaacaaaacaaaacaaaactttttaggccgggtgtggt 240
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 381 aataaattaacaaaaaaacaaaaaacaaaacaaaac-----tttttaggccgggtgtggt 435
Query: 241 ggtgcacgcctgtaatcccagcacttcggaggcagaggcaggcggatttctgtgttcgag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 ggtgcacgcctgtaatcccagcacttcggaggcagaggcaggcggatttctgtgttcgag 495
Query: 301 gccagcctggtctacagagtgagttccaggacagccagggctacacacacacacacacac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 496 gccagcctggtctacagagtgagttccaggacagccagggctacacacacacaaaaa--- 552
Query: 361 acacacacacaaaccctgtctctaaaaaacaaacaaacaaacaaacaaaaacaaaaaaac 420
||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct: 553 ----------aaaccctgtctctaaaaaacaaacaaacaaa-aaacc----caaaaaaac 597
Query: 421 aaaaaacaagaataaattattctcagccttgaacattgagaacatcaagcaagagaattc 480
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 aaaaa-caagaataaattattctcagccttgaacattgagaacatcaagcaagagaattc 656
Query: 481 tactctatctatgatccttaataagaaaaagcagacagt 519
|||||||||||||||||||||||||||||||||||||||
Sbjct: 657 tactctatctatgatccttaataagaaaaagcagacagt 695
Score = 58.7 bits (30), Expect = 1e-12
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 342 tacacacacacacacacacacacacacaca 371
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Sbjct: 888 tacacacacacacacacacacacacacaca 859
Score = 56.8 bits (29), Expect = 4e-12
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 343 acacacacacacacacacacacacacaca 371
|||||||||||||||||||||||||||||
Sbjct: 881 acacacacacacacacacacacacacaca 853
Score = 56.8 bits (29), Expect = 4e-12
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 343 acacacacacacacacacacacacacaca 371
|||||||||||||||||||||||||||||
Sbjct: 883 acacacacacacacacacacacacacaca 855
Score = 56.8 bits (29), Expect = 4e-12
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 343 acacacacacacacacacacacacacaca 371
|||||||||||||||||||||||||||||
Sbjct: 885 acacacacacacacacacacacacacaca 857
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 51
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 5
Length of query: 519
Length of database: 919
Length adjustment: 10
Effective length of query: 509
Effective length of database: 909
Effective search space: 462681
Effective search space used: 462681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
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