BAC Information

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BAC

Clone NameMSMg01-290F24
Chromosome13 (Build37)
Map Location 69,100,949 - 69,101,240
singlet/doubletsinglet
Overlap geneAdcy2
Upstream geneLOC674779, LOC677603, LOC100042124, LOC666222, AA414992, LOC666238, EG666245, EG666272, LOC100042223, Mtrr, LOC100042233, Fastkd3, 1700001L19Rik, LOC666205
Downstream geneLOC218332, Pols, A530095I07Rik, Srd5a1, Nsun2, LOC100042260, 3110006E14Rik, 4930547H16Rik, Med10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-290F24.T7 (MSMg01no290_f24.b1)MSMg01-290F24.TJ (MSMg01no290_f24.g1)
ACCAG419669AG419670
length728732
length of high quality
(start - end)		319 (47 - 365)294 (77 - 370)
definitionCHROMAT_FILE: MSMg01no290_f24.b1 PHD_FILE: MSMg01no290_f24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:54 2005CHROMAT_FILE: MSMg01no290_f24.g1 PHD_FILE: MSMg01no290_f24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATT
TTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCC
CTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCT
TTTTGTCCTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCA
TTAGGTCCCATTTGTCAATTCTCGATCTTACAGAGCAAGCCATTGCTGTT
CTGTTCAGGAATCTTTCCCCTGTACCCATATCTTCAAGGCTTTTCCCCAC
TTTCTCCTCTATAATTTTTAGNGTCTNTGGCTTTACCCGAAGTTCCTTGA
TCCACTTAGATTTGACCTTAGTACAAGGAGATAAGAATGGATCGATTCGC
ATTCTTCTACATGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAAT
GCTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGT
GACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGG
TCTACTTGTCTGTCTCTATACCAGTACCATGCAGTTTTTATCACAATTGC
CCTGTAGTAAAGCTTTAGGTCAGGCATGGTGATTCCACCAGAGGTTCTTT
TTATCTTGAGAAGAGTTTTTGCTATCCT

CCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTGATTAAAAAAGGGAGGGGGGGA
AGTATTCATTGCTATATAAAGGTTCTGACTTGAAATTCTACAGAGCTGTG
GATAAAGTGTAGGGAATCTAGGTTGTAACAGAGTTTGACCAAATCCTTCA
TGTGTCTACTCTATGCAGGTTCAAGGAGGACTCAGAATAAATATGGCTTT
ACCTTAGTACCAGAACTCTACTGACTTCACTGACTCTCCTACAGCAACCT
TACAGGTCTCTTTTATATGTCAGATCACATGGGCACAAGCAAGTTCTTTC
AGGCTTCTCTGTGCTCTCTTTTTTGCTTTGACCATCTATAAAGAAGCCAA
GTAAATTGGAATTAATTTTATATGCTTTAATATTTTATCATTTTTCTTTC
ATATAAGAAACCCCTCCAGAGCCGGGTGTGGTGGTGCACGCCTTTAATCC
CGGCACTCGGGAGGCAGAGACAGGCGGATTTCTGAGTTCGAGGCCAGCCT
GGTCTACAAAGTGATTTCCAGGAGAGCCAGGGCTATACAGAGAAACCCTG
TCTCGAAAAACCCTNNTAAAANAAAAAAAAAATAACATGAATAGAAAAGA
AAAGAAACCCCTCCCCTCACTGTTATCATTAAGAGCCCCTGTATTTTATG
AAAATCTTAATAAAATGCGTTCTTCATTTAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no290_f24.g1 MSMg01no290_f24.g1 CHROMAT_FILE:
MSMg01no290_f24.g1 PHD_FILE: MSMg01no290_f24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:54 2005
         (294 letters)



>mm_chr13_69100749_69101442
          Length = 694

 Score =  565 bits (292), Expect = e-165
 Identities = 292/292 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgattaaaaaagggagggggggaagtattcattgctatataaaggttctgacttgaaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgattaaaaaagggagggggggaagtattcattgctatataaaggttctgacttgaaat 260

                                                                       
Query: 61  tctacagagctgtggataaagtgtagggaatctaggttgtaacagagtttgaccaaatcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctacagagctgtggataaagtgtagggaatctaggttgtaacagagtttgaccaaatcc 320

                                                                       
Query: 121 ttcatgtgtctactctatgcaggttcaaggaggactcagaataaatatggctttacctta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcatgtgtctactctatgcaggttcaaggaggactcagaataaatatggctttacctta 380

                                                                       
Query: 181 gtaccagaactctactgacttcactgactctcctacagcaaccttacaggtctcttttat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtaccagaactctactgacttcactgactctcctacagcaaccttacaggtctcttttat 440

                                                               
Query: 241 atgtcagatcacatgggcacaagcaagttctttcaggcttctctgtgctctc 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgtcagatcacatgggcacaagcaagttctttcaggcttctctgtgctctc 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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