BAC Information

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BAC

Clone NameMSMg01-290I24
Chromosome13 (Build37)
Map Location 63,254,900 - 63,431,390
singlet/doubletdoublet
Overlap gene2010111I01Rik, Fancc
Upstream geneEG630579, LOC665455, LOC100041430, LOC100041962, LOC100041437, LOC100041979, LOC100041986, 8430426H19Rik, LOC100041455, 6720457D02Rik, EG665503, LOC100041493, LOC630857, EG630978, EG435366, LOC380850, LOC630951, Fbp2, Fbp1, LOC100042090, EG665524
Downstream genePtch1, C030010C08Rik, 0610007P08Rik, 9330134C04Rik, EG665575, Hsd17b3, Slc35d2, Zfp367, Habp4, Cdc14b, 1110018J18Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-290I24.T7 (MSMg01no290_i24.b1)MSMg01-290I24.TJ (MSMg01no290_i24.g1)
ACCAG419806AG419807
length722726
length of high quality
(start - end)
231 (128 - 358)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no290_i24.b1 PHD_FILE: MSMg01no290_i24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:09 2005CHROMAT_FILE: MSMg01no290_i24.g1 PHD_FILE: MSMg01no290_i24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:09 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,431,160 - 63,431,390)(63,254,900 - 63,255,186)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCCCCTGGTCCTCTGTGTTTGTCCTTCTGTTTGCATTTGGCCTTGTG
GCCAATAAGAGACATGTAGTCTCCCAGGATGTACTATAGGAACGGCACAC
TGGGCGCTCTCAGTGATCACTGTCTTTATTCCCAGCAAAGCTTCAGGAGA
CAGGGGGATGGGAAAAGGAAGGCATTTGAAGAATGAGTGGAGGTTAGATG
CCTCCAGTAGACCAGAGGACTCTAGGTTCCCATCAGCAGAGGTTGGACAG
CAACTGCAAGGGCAAAATACACAGGAGCTTCTCCTATCTACAGCTTTGGC
TGCTGTAACAATGGCTACATCCCTAACCTTCCCGCGATGCTTGCCTCCTC
AGAGTAGTACTGTTCTAGACACCTTTCAAAGAAAATTGTGGCCTCGTTCC
CTGTGATGCTGTCTGCCATTTGACTAAGGGCAGAGCTCAGGTGCTCAACC
TACTAAAATCCTACTCAGCCCAAGGCTGTAGAGGTCTCTCGGGTTTTAGC
AGGGGTTTCTGCTTTCTAGGGCAACTATAAACCTGCATGGCTTATTCTTA
CCATCCCTCTTTCCCTGGAGAAGTTAAATAGATGGAGCATACCCAGTCTG
GCATCTGGGAGGAAACCTCGGCCAGTGCACTGGCTGCTACTCACTGTTGT
GAGCACAGCTGTAAGCGTATGC
CCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTCCCTCAGGAAGGGAGCAGCTTC
TGGGAGTCACAAAGGCCTCCTTCCTTCTCTGCTGGAGGCATGTTTTAAAT
TAATGGACACAACACTCTAATCTGGCTGGGTGGGTCGCATTAAGGAGCAG
TAGAGGGACAGTTTTCAGGCTGGGCGTGATACAAGCTTCAGGCATCTAGT
ACACTTGTCCTCTGCAGAGGAGTGGCCAGCCTCCACCATGCTGGGAAAGT
GAGGAGCATAGATCTGCTGAGGCTCTCTGCAGCCCAGGCCTGCCTATTTC
ACACACACACACACTTACATACATTCCNANACANANCCCCTCTTATTTAT
ACATTTATACACACACACTTTCCCCCACACACAAAAAAAAAATAGCATAG
AGGGTGTGGCAGAGAATTCAAGAGAGGGGCTGTTACTTTGAGATTTAAAA
TGGCAATCCTGCATATCTCTCATCTGGAAAAACAATACATTCAATGACTT
ATGGCTTAAGAAAGCAAAACAATAACAACAAAATCTTTGCTCTTAGTGTG
AAGATGTTAGCTATGTGATTATCTTCCTTGAGGTAGGTGATCCCTCTTCC
AGCGCATAAGAATTCCAGGGGTTTTGACAGAAGGGAAACCTGAACCGATT
GCCTGGGTCTGATAAACTGGATTGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no290_i24.b1 MSMg01no290_i24.b1 CHROMAT_FILE:
MSMg01no290_i24.b1 PHD_FILE: MSMg01no290_i24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:09 2005
         (231 letters)



>mm_chr13_63430960_63431590
          Length = 631

 Score =  431 bits (223), Expect = e-125
 Identities = 229/231 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gatgtactataggaacggcacactgggcgctctcagtgatcactgtctttattcccagca 60
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 gatgtactataggaatggcacactgggcgctctcagtgatcactgtctttattcccagca 372

                                                                       
Query: 61  aagcttcaggagacagggggatgggaaaaggaaggcatttgaagaatgagtggaggttag 120
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 gagcttcaggagacagggggatgggaaaaggaaggcatttgaagaatgagtggaggttag 312

                                                                       
Query: 121 atgcctccagtagaccagaggactctaggttcccatcagcagaggttggacagcaactgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 atgcctccagtagaccagaggactctaggttcccatcagcagaggttggacagcaactgc 252

                                                              
Query: 181 aagggcaaaatacacaggagcttctcctatctacagctttggctgctgtaa 231
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 aagggcaaaatacacaggagcttctcctatctacagctttggctgctgtaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 231
Length of database: 631
Length adjustment: 9
Effective length of query: 222
Effective length of database: 622
Effective search space:   138084
Effective search space used:   138084
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no290_i24.g1 MSMg01no290_i24.g1 CHROMAT_FILE:
MSMg01no290_i24.g1 PHD_FILE: MSMg01no290_i24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:09 2005
         (287 letters)



>mm_chr13_63254700_63255386
          Length = 687

 Score =  547 bits (283), Expect = e-160
 Identities = 286/287 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctccctcaggaagggagcagcttctgggagtcacaaaggcctccttccttctctgctgga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctccctcaggaagggagcagcttctgggagtcacaaaggcctccttccttctctgctgga 260

                                                                       
Query: 61  ggcatgttttaaattaatggacacaacactctaatctggctgggtgggtcgcattaagga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggcatgttttaaattaatggacacaacactctaatctggctgggtgggtcgcattaagga 320

                                                                       
Query: 121 gcagtagagggacagttttcaggctgggcgtgatacaagcttcaggcatctagtacactt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcagtagagggacagttttcaggctgggcgtgatacaagcttcaggcatctagtacactt 380

                                                                       
Query: 181 gtcctctgcagaggagtggccagcctccaccatgctgggaaagtgaggagcatagatctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtcctctgcagaggagtggccagcctccaccatgctgggaaagtgaggagcatagatctg 440

                                                          
Query: 241 ctgaggctctctgcagcccaggcctgcctatttcacacacacacaca 287
           ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgaggctctcagcagcccaggcctgcctatttcacacacacacaca 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)