BAC Information

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BAC

Clone NameMSMg01-290O16
Chromosome13 (Build37)
Map Location 28,839,069 - 28,839,470
singlet/doubletsinglet
Overlap genenone
Upstream genePrl7c1, Prl2a1, OTTMUSG00000000651, LOC666321, LOC195243, LOC100041036, Prl4a1, Prl5a1, LOC100042388, LOC100042393, LOC100042399, Ppia-ps13_297.1
Downstream geneLOC626683, 2610307P16Rik, Sox4, LOC100041135, Cdkal1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-290O16.T7 (MSMg01no290_o16.b1)MSMg01-290O16.TJ (MSMg01no290_o16.g1)
ACCAG420066AG420067
length790734
length of high quality
(start - end)
234 (127 - 360)611 (74 - 684)
definitionCHROMAT_FILE: MSMg01no290_o16.b1 PHD_FILE: MSMg01no290_o16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:35 2005CHROMAT_FILE: MSMg01no290_o16.g1 PHD_FILE: MSMg01no290_o16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAATGTGTACCTCGCCCAAGATATTTCTGACCTGAAAACTACACATG
ACAATACTGTCCCAGTATTCTACTTCACAAGAGCCCTTTGTTTCTTGTGA
TGATCTGGTAGAGAATGGCCCCACAAATGGATATATTTGAATACTTCATC
CCTGGTTGGTGGACAGTGTGTGAAGAATTAGAAGGACAGTGTTTCCTTGG
TGAAGACATGTCACAGGGTGATCCCAGAGGTTTCAAAAGATTCCTACTAG
TTCTGGTATACTCTCTCTCGTTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTTTTTCTCTGTGCCGCCCCCCCCTGTGTTTTTGTTTGTN
TNTGTTTNNTCTCCCCCCCCTTAAAAAAAAAAAAAAATCTCTGCGTGGGG
GGGCCTTTTCTTCTTTATCCCCCTATTCTTTCTCCATCTTTTCATTTTTT
ACCCCCCTCCCCCCCTTCTTTTTTTTTACTTTTCCCCTTTCTTTTCTTCC
CCTTTTATCTCCTTTTTTTCCCCTTTTCTATTCCCTTTTTTATTCTCTTT
TACCTCTTTCTATATTTTCTTTCATCTTCTATTTTCCCCTTTTCCTCCTC
CTTTTTTCTTTATTCTTTACATTTTTATTACTCCTATTTTTTTTTTCTTA
TCTTTCCTCCTTCCTCTCTATTCCATTCATCGTATTCCTTTTCCTTTCCT
TTTATTTTTCCCCCTTCCTTTTCCCCCTTATTCTTCCTCC
CGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTTCATAGTAACTATGTTGATTGCAAT
TTCCTTTCTTTGATAAGACCGCAAAAGAAAGAGACAGGATCATTTTAAGT
TTATTTTAATGACTAACTTTGGTGACTTCACATAACTAAAGCCATGATGT
TTTACCACAGGCCCAGAGTCTCCAAGTCAGTAATTTAAGCCTCATTTCGT
CTTTGTCTCCATTTTTACATAGGAGATTTCCATACATGGAGGGACACAAA
TCTCACTGGTGGATCGCTTCAGTTTTGACAGATGTACACACTTGCTTAGC
CAGGCCTTCCCATCAGGATGGAGAAGCTAACCATTTTCGTGGTTGGTAAA
GTCAGTCACTGCCTTCCTATTCCCAAAGGCACACAACGTTCTGATCTGTT
TTGTTTTCTTAGGGTGGATTTGTCTGTATTAAAACTTCATGCACATGTGA
GTGCTAAAAGGGACTCTCTTGCTTAAGGCTTTTTTTTTTCCATTCATAAA
GTTAACTTTGATTAGTCACCCCCATTGCACTATGTAAATACTAGCAACTG
TGGATAAACCAATCATGTGGAGAAAATGAATGGACTTTAAAAAACAGATA
CCGCTAATACATTATTATTATTTTATTTTTAGTATTATTTTAAGTATATT
TGATGACAGAGGTGAGAGGACCTCTTTTGAGATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no290_o16.g1 MSMg01no290_o16.g1 CHROMAT_FILE:
MSMg01no290_o16.g1 PHD_FILE: MSMg01no290_o16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:35 2005
         (611 letters)



>mm_chr13_28839069_28840079
          Length = 1011

 Score =  746 bits (386), Expect = 0.0
 Identities = 398/402 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttcatagtaactatgttgattgcaatttcctttctttgataagaccgcaaaagaaagag 60
           |||||||||||||||||||||||||||||||||||||||| ||||  |||||||||||||
Sbjct: 402 cttcatagtaactatgttgattgcaatttcctttctttgaaaagagtgcaaaagaaagag 343

                                                                       
Query: 61  acaggatcattttaagtttattttaatgactaactttggtgacttcacataactaaagcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 acaggatcattttaagtttattttaatgactaactttggtgacttcacataactaaagcc 283

                                                                       
Query: 121 atgatgttttaccacaggcccagagtctccaagtcagtaatttaagcctcatttcgtctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 atgatgttttaccacaggcccagagtctccaagtcagtaatttaagcctcatttcgtctt 223

                                                                       
Query: 181 tgtctccatttttacataggagatttccatacatggagggacacaaatctcactggtgga 240
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 222 tgtctccatttttacataggagatttccatacatggagagacacaaatctcactggtgga 163

                                                                       
Query: 241 tcgcttcagttttgacagatgtacacacttgcttagccaggccttcccatcaggatggag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 tcgcttcagttttgacagatgtacacacttgcttagccaggccttcccatcaggatggag 103

                                                                       
Query: 301 aagctaaccattttcgtggttggtaaagtcagtcactgccttcctattcccaaaggcaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 aagctaaccattttcgtggttggtaaagtcagtcactgccttcctattcccaaaggcaca 43

                                                     
Query: 361 caacgttctgatctgttttgttttcttagggtggatttgtct 402
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42  caacgttctgatctgttttgttttcttagggtggatttgtct 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1011
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1001
Effective search space:   601601
Effective search space used:   601601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)