BAC Information

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BAC

Clone NameMSMg01-291G07
Chromosome13 (Build37)
Map Location 118,013,648 - 118,176,112
singlet/doubletdoublet
Overlap geneEmb, EG623365
Upstream geneIsl1, EG668276, Gm280, LOC100041169, Parp8, LOC668288, LOC623312
Downstream geneLOC382807, Hcn1, LOC100041695, LOC674926, Mrps30
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-291G07.T7 (MSMg01no291_g07.b1)MSMg01-291G07.TJ (MSMg01no291_g07.g1)
ACCAG420402AG420403
length737725
length of high quality
(start - end)
190 (125 - 314)213 (420 - 632)
definitionCHROMAT_FILE: MSMg01no291_g07.b1 PHD_FILE: MSMg01no291_g07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:26:10 2005CHROMAT_FILE: MSMg01no291_g07.g1 PHD_FILE: MSMg01no291_g07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:26:10 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,013,648 - 118,013,837)(118,175,903 - 118,176,112)
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGAACGAATCCGCGGAA
TTCATCACATACATCACACTCCATTGCTTTTTATCTGTGTCACATATGTA
CAAATACATGTATATTATATCCTGTGAGATGCATATTATACATGTGTTTC
ATGTGATAAGTATGTTGTGTGTGTGTTTGAGTGGGCACACACATATTGGT
AGCTCTGTCCACTGGTTTCTAAAAACTAAGTATACTTAATACCTAGATGT
TGTCTGGGAGCACCATTTTTAAATAATGTTGCAGAAATGGCTGCTTTCTT
CCGAGCTGGGGTGGTTTTTTGTTTATACCTGGGTGCCAGAAAACAATGGA
GTCCTTGAAGGATGATGACTCATGTCTGGAAGACGCACGTACCAGATCAC
CCAGATAATTCCCCCCACCCCCACATGGTGGTGATGAGCTGATAGGATCT
TGCTGTGTACCTGGTCCTGGCCTTGCCCTTGTGAGCCTTGCAGATTAATC
TCCCGAGTACTATATTAACGGTGACTTTGCTAATCTATGTTGGAATTCAT
AAGTCCAGACTGATAACTATTAATTAAACTAGGGGGAACTCTTTGCTGAT
GCTCCCCGTTCGTCCTACTTTTACAGGAATTTCCTAGACACCTCTTACCC
ACTTCTCACGATAACAATACTCTTTCTTTGCCGAATTGCGGCCATATACT
CATTTTTCCTTCGTCCCCCTTATTACTCCTATCACTG
ATGCAGTGGGAGCCTGGNGGCGCCGGTTCCAACCGCGAGGNGAACNANAG
AATTTCAGCAGCGGCGGGCCCNAAGGCCNACATTCCAANGCCAAGGGNNC
GTTTTTTTCTTAAAGAAGAGAAGCANAGATCCAAGCCTAAGGGCACATTT
ATCAAAAATCTGTCGGAGACTTGTTAAACCATGATTTGCTTGGCCGTATT
TCCACAAACATTTGATCTAGGTAACCCCTCTCAATCTGTTTATATGAAAA
CCTCTTCAAGTAATGCTGATATTGCTAGTATGAGGTCTACCCTTTGAGAA
TTTTTTTTTTTAGCCNNCAAAGAGGAAAAGAAANAAANAAGCAATTTTTT
ACCCCCCCCCCCTCTATACTTTTCCACCAGGTGTCTATTTGCCTTATACC
CCCCCCACAGAAAAAAACTTAAGTAATTCTTGGTTCAAAAAAAGCACAAA
TCAGCATCTCCATGTTGTATTTAAAGTTGACTTTGCAAAAGAAGAAAAAC
ACGTGTGTGAGGTGAAGAAGGAAACTTCACCTTGCAGTGACATTGAGACA
CCTGAGAGAAGATGCTGCGAAGGTTTGTGAGCTGAGGTTCAGGGGAGAGG
ATAGTAGTGCACAGTTCAGCCTGTGGGTGCGACTTTCTTTTGTTATGTGT
CCTAATGGAGGAGTGCTGAGGTCAAAGGACCACACTGGCAGGCAGCTCTG
TGTTACCTAAGAAAGGATGATGGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no291_g07.b1 MSMg01no291_g07.b1 CHROMAT_FILE:
MSMg01no291_g07.b1 PHD_FILE: MSMg01no291_g07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:26:10 2005
         (190 letters)



>mm_chr13_118013448_118014037
          Length = 590

 Score =  352 bits (182), Expect = e-102
 Identities = 188/190 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgagatgcatattatacatgtgtttcatgtgataagtatgttgtgtgtgtgtttgagtgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgagatgcatattatacatgtgtttcatgtgataagtatgttgtgtgtgtgtttgagtgg 260

                                                                       
Query: 61  gcacacacatattggtagctctgtccactggtttctaaaaactaagtatacttaatacct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcacacacatattggtagctctgtccactggtttctaaaaactaagtatacttaatacct 320

                                                                       
Query: 121 agatgttgtctgggagcaccatttttaaataatgttgcagaaatggctgctttcttccga 180
           |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 321 agatgttggctgggagcaccatttttaaataatgttgtagaaatggctgctttcttccga 380

                     
Query: 181 gctggggtgg 190
           ||||||||||
Sbjct: 381 gctggggtgg 390


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 190
Length of database: 590
Length adjustment: 8
Effective length of query: 182
Effective length of database: 582
Effective search space:   105924
Effective search space used:   105924
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no291_g07.g1 MSMg01no291_g07.g1 CHROMAT_FILE:
MSMg01no291_g07.g1 PHD_FILE: MSMg01no291_g07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:26:10 2005
         (213 letters)



>mm_chr13_118175703_118176315
          Length = 613

 Score =  375 bits (194), Expect = e-109
 Identities = 206/210 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   taagtaattcttggttcaaaaaaagcacaaatcagcatctccatgttgtatttaaagttg 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 410 taagtaattcttggttcaaaaaaagcacaaatcagcatctccatgttgtatttaaaattg 351

                                                                       
Query: 61  actttgcaaaagaagaaaaacacgtgtgtgaggtgaagaaggaaacttcaccttgcagtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 actttgcaaaagaagaaaaacacgtgtgtgaggtgaagaaggaaacttcaccttgcagtg 291

                                                                       
Query: 121 acattgagacacctgagagaagatgctgcgaaggtttgtgagctgaggttcaggggagag 180
           |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct: 290 acattgagacacctgagagaagatgctgtgaaggtttgtgagctgaggtttaggggagag 231

                                         
Query: 181 gatagtagtgcacagttcagcctgtgggtg 210
           |||||||||||||||||||| |||||||||
Sbjct: 230 gatagtagtgcacagttcagtctgtgggtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 213
Length of database: 613
Length adjustment: 9
Effective length of query: 204
Effective length of database: 604
Effective search space:   123216
Effective search space used:   123216
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)