MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-292N24
Chromosome	13 (Build37)
Map Location	112,843,645 - 112,843,931
singlet/doublet	singlet
Overlap gene	none
Upstream gene	4732495G21Rik, LOC100040640, EG621953, Gpbp1, LOC100040666, Mier3, Map3k1, LOC668181
Downstream gene	LOC100040716, LOC100041161, LOC100041175, Ankrd55, LOC100040725, Il6st, Il31ra, LOC100041240, Ddx4, 9130023D20Rik, Ppap2a, LOC100041282, Skiv2l2, Dhx29, LOC667756, Ccnu, EG622408, EG622422, 2310016C16Rik
Link	Open Mouse BAC browser

Click to get alignment info.

name	4732495G21Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:238880 MGI:2444552
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100040640 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040640
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 7 Proteins pseudo : _no_value

name	EG621953 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:621953 MGI:3647282
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs

name	Gpbp1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:73274 MGI:1920524
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100040666 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040666
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	Mier3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:218613 MGI:2442317
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Map3k1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:26401 MGI:1346872
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC668181 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:668181
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 365 ESTs, 6 Proteins pseudo : _no_value

name	LOC100040716 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040716
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein pseudo : _no_value

name	LOC100041161 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041161
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST

name	LOC100041175 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041175
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs, 1 Protein

name	Ankrd55 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:77318 MGI:1924568
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100040725 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040725
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	Il6st (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:16195 MGI:96560
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Il31ra (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:218624 MGI:2180511
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100041240 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041240
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 73 mRNAs, 3232 ESTs, 68 Proteins pseudo : _no_value

name	Ddx4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:13206 MGI:102670
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	9130023D20Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:268706 MGI:1918839
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ppap2a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19012 MGI:108412
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	LOC100041282 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041282
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs

name	Skiv2l2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:72198 MGI:1919448
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Dhx29 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:218629 MGI:2145374
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC667756 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667756
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein pseudo : _no_value

name	Ccnu (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:218630 MGI:2145534
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG622408 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:622408 MGI:3648807
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG622422 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:622422 MGI:3648570
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 1 Protein

name	2310016C16Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:69590 MGI:1916840
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	4732495G21Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802774 GeneID:238880 MGI:2444552
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 4732495G21 gene transcript_id : NM_175497.3

name	EG621953 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94395666 GeneID:621953 MGI:3647282
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs product : predicted gene, EG621953 transcript_id : XM_896763.2

name	Gpbp1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142376987 GeneID:73274 MGI:1920524
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : GC-rich promoter binding protein 1 transcript_id : NM_028487.3

name	Mier3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142388120 GeneID:218613 MGI:2442317
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : mesoderm induction early response 1, family member 3 transcript_id : NM_172593.2

name	Map3k1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:101944545 GeneID:26401 MGI:1346872
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : mitogen activated protein kinase kinase kinase 1 transcript_id : NM_011945.2

name	LOC100041161 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149264701 GeneID:100041161
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST product : hypothetical protein LOC100041161 transcript_id : XM_001476499.1

name	LOC100041175 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149264703 GeneID:100041175
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs, 1 Protein product : hypothetical protein LOC100041175 transcript_id : XM_001476516.1

name	Ankrd55 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142363812 GeneID:77318 MGI:1924568
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ankyrin repeat domain 55 transcript_id : NM_029898.2

name	LOC100040725 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149264685 GeneID:100040725
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100040725 transcript_id : XM_001475139.1

name	Il6st (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:37591174 GeneID:16195 MGI:96560
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : interleukin 6 signal transducer transcript_id : NM_010560.2

name	Il31ra (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:21314847 GeneID:218624 MGI:2180511
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : interleukin 31 receptor A transcript_id : NM_139299.1

name	Ddx4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:33859535 GeneID:13206 MGI:102670
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 transcript_id : NM_010029.1

name	9130023D20Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:32129222 GeneID:268706 MGI:1918839
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 9130023D20 gene transcript_id : NM_178746.3

name	Ppap2a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142369083 GeneID:19012 MGI:108412
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : phosphatidic acid phosphatase 2a transcript_id : NM_008247.2

name	Ppap2a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6679430 GeneID:19012 MGI:108412
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : phosphatidic acid phosphatase 2a transcript_id : NM_008903.1

name	LOC100041282 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149264710 GeneID:100041282
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs product : hypothetical protein LOC100041282 transcript_id : XM_001476792.1

name	Skiv2l2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130428 GeneID:72198 MGI:1919448
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : superkiller viralicidic activity 2-like 2 (S. cerevisiae) transcript_id : NM_028151.2

name	Dhx29 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:46852275 GeneID:218629 MGI:2145374
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : DEAH (Asp-Glu-Ala-His) box polypeptide 29 transcript_id : NM_172594.2

name	Ccnu (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124486693 GeneID:218630 MGI:2145534
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cyclin U transcript_id : NM_001081062.1

name	EG622408 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142343766 GeneID:622408 MGI:3648807
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : predicted gene, EG622408 transcript_id : NM_001037914.2

name	EG622422 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94395668 GeneID:622422 MGI:3648570
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 1 Protein product : predicted gene, EG622422 transcript_id : XM_897087.2

name	2310016C16Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142368412 GeneID:69590 MGI:1916840
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 2310016C16 gene transcript_id : NM_027127.2

name	4732495G21Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30425250 CCDS:CCDS26768.1 GeneID:238880 MGI:2444552
definition	GO_component : GO:0005856 - cytoskeleton [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA] codon_start : 1 product : hypothetical protein LOC238880 protein_id : NP_780706.1

name	EG621953 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82952356 GeneID:621953 MGI:3647282
definition	codon_start : 1 product : hypothetical protein protein_id : XP_901856.1

name	Gpbp1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:40254169 CCDS:CCDS26769.1 GeneID:73274 MGI:1920524
definition	GO_component : GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IDA]; GO:0005515 - protein binding [Evidence IPI]; GO:0003700 - transcription factor activity [Evidence IDA] GO_process : GO:0045893 - positive regulation of transcription, DNA-dependent [Evidence IDA] codon_start : 1 exception : mismatches in translation product : G+C-rich promoter-binding protein protein_id : NP_082763.2

name	Mier3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27369852 CCDS:CCDS26770.1 GeneID:218613 MGI:2442317
definition	GO_process : GO:0045449 - regulation of transcription [Evidence IEA] codon_start : 1 product : mesoderm induction early response 1, family member 3 protein_id : NP_766181.1

name	Map3k1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:101944546 CCDS:CCDS26771.1 GeneID:26401 MGI:1346872
definition	GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA] [Evidence IPI]; GO:0004672 - protein kinase activity [Evidence ISS]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0008637 - apoptotic mitochondrial changes [Evidence IMP]; GO:0001747 - eye development (sensu Mammalia) [Evidence IMP]; GO:0030838 - positive regulation of actin filament polymerization [Evidence IMP]; GO:0006468 - protein amino acid phosphorylation [Evidence IEA]; GO:0030334 - regulation of cell migration [Evidence IMP]; GO:0007179 - transforming growth factor beta receptor signaling pathway [Evidence IMP]; GO:0042060 - wound healing [Evidence IMP] codon_start : 1 note : MEK kinase product : mitogen activated protein kinase kinase kinase 1 protein_id : NP_036075.2

name	LOC100041161 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149264702 GeneID:100041161
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001476549.1

name	LOC100041175 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149264704 GeneID:100041175
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001476566.1

name	Ankrd55 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30794200 CCDS:CCDS26772.1 GeneID:77318 MGI:1924568
definition	codon_start : 1 exception : mismatches in translation product : ankyrin repeat domain 55 protein_id : NP_084174.1

name	LOC100040725 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149264686 GeneID:100040725
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001475189.1

name	Il6st (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:37591175 CCDS:CCDS26773.1 GeneID:16195 MGI:96560
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004896 - hematopoietin/interferon-class (D200-domain) cytokine receptor activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0004872 - receptor activity [Evidence IEA] GO_process : GO:0008284 - positive regulation of cell proliferation [Evidence IGI]; GO:0008593 - regulation of Notch signaling pathway [Evidence IDA]; GO:0007165 - signal transduction [Evidence IDA] codon_start : 1 exception : mismatches in translation product : interleukin 6 signal transducer protein_id : NP_034690.2

name	Il31ra (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21314848 GeneID:218624 MGI:2180511
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA] [Evidence ISS]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0019955 - cytokine binding [Evidence ISS]; GO:0004896 - hematopoietin/interferon-class (D200-domain) cytokine receptor activity [Evidence ISS]; GO:0019901 - protein kinase binding [Evidence ISS]; GO:0004872 - receptor activity [Evidence IEA]; GO:0003713 - transcription coactivator activity [Evidence ISS] GO_process : GO:0006916 - anti-apoptosis [Evidence ISS]; GO:0019221 - cytokine and chemokine mediated signaling pathway [Evidence ISS]; GO:0006952 - defense response [Evidence ISS]; GO:0042592 - homeostasis [Evidence ISS]; GO:0007259 - JAK-STAT cascade [Evidence ISS]; GO:0030225 - macrophage differentiation [Evidence ISS]; GO:0000165 - MAPKKK cascade [Evidence ISS]; GO:0008284 - positive regulation of cell proliferation [Evidence ISS]; GO:0045893 - positive regulation of transcription, DNA-dependent [Evidence ISS]; GO:0042517 - positive regulation of tyrosine phosphorylation of Stat3 protein [Evidence ISS]; GO:0042523 - positive regulation of tyrosine phosphorylation of Stat5 protein [Evidence ISS]; GO:0007169 - transmembrane receptor protein tyrosine kinase signaling pathway [Evidence ISS] codon_start : 1 exception : mismatches in translation note : cytokine receptor NR10; gp130-like monocyte receptor; interleukin 31RA; class I cytokine receptor product : interleukin 31 receptor A protein_id : NP_647460.1

name	Ddx4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:33859536 CCDS:CCDS26774.1 GeneID:13206 MGI:102670
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO:0004386 - helicase activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0003724 - RNA helicase activity [Evidence IEA] GO_process : GO:0007275 - development [Evidence IEA] codon_start : 1 note : D-E-A-D (aspartate-glutamate-alanine-aspartate) box polypeptide 4; DEAD (aspartate-glutamate-alanine-aspartate) box polypeptide 4; mvh / m'vasa; DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 4 product : DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 protein_id : NP_034159.1

name	9130023D20Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30520193 CCDS:CCDS26775.1 GeneID:268706 MGI:1918839
definition	codon_start : 1 product : hypothetical protein LOC268706 protein_id : NP_848861.1

name	Ppap2a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:45592928 CCDS:CCDS26776.1 GeneID:19012 MGI:108412
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0005887 - integral to plasma membrane [Evidence TAS]; GO:0016020 - membrane [Evidence IEA]; GO:0005624 - membrane fraction [Evidence ISS]; GO:0005886 - plasma membrane [Evidence TAS] GO_function : GO:0016787 - hydrolase activity [Evidence IEA]; GO:0008195 - phosphatidate phosphatase activity [Evidence ISS] [Evidence TAS] [Evidence IDA] GO_process : GO:0030521 - androgen receptor signaling pathway [Evidence ISS]; GO:0006672 - ceramide metabolism [Evidence TAS]; GO:0006651 - diacylglycerol biosynthesis [Evidence TAS]; GO:0008285 - negative regulation of cell proliferation [Evidence ISS]; GO:0046839 - phospholipid dephosphorylation [Evidence ISS]; GO:0006470 - protein amino acid dephosphorylation [Evidence TAS] [Evidence IDA]; GO:0007205 - protein kinase C activation [Evidence ISS]; GO:0019216 - regulation of lipid metabolism [Evidence ISS]; GO:0007165 - signal transduction [Evidence TAS]; GO:0006670 - sphingosine metabolism [Evidence TAS] codon_start : 1 note : isoform 1 is encoded by transcript variant 1; lipid phosphate phosphatase 1; hydrogen peroxide inducible protein 53 product : phosphatidic acid phosphatase 2a isoform 1 protein_id : NP_032273.1

name	Ppap2a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6679431 CCDS:CCDS26777.1 GeneID:19012 MGI:108412
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0005887 - integral to plasma membrane [Evidence TAS]; GO:0016020 - membrane [Evidence IEA]; GO:0005624 - membrane fraction [Evidence ISS]; GO:0005886 - plasma membrane [Evidence TAS] GO_function : GO:0016787 - hydrolase activity [Evidence IEA]; GO:0008195 - phosphatidate phosphatase activity [Evidence ISS] [Evidence TAS] [Evidence IDA] GO_process : GO:0030521 - androgen receptor signaling pathway [Evidence ISS]; GO:0006672 - ceramide metabolism [Evidence TAS]; GO:0006651 - diacylglycerol biosynthesis [Evidence TAS]; GO:0008285 - negative regulation of cell proliferation [Evidence ISS]; GO:0046839 - phospholipid dephosphorylation [Evidence ISS]; GO:0006470 - protein amino acid dephosphorylation [Evidence TAS] [Evidence IDA]; GO:0007205 - protein kinase C activation [Evidence ISS]; GO:0019216 - regulation of lipid metabolism [Evidence ISS]; GO:0007165 - signal transduction [Evidence TAS]; GO:0006670 - sphingosine metabolism [Evidence TAS] codon_start : 1 note : isoform 2 is encoded by transcript variant 2; lipid phosphate phosphatase 1; hydrogen peroxide inducible protein 53 product : phosphatidic acid phosphatase 2a isoform 2 protein_id : NP_032929.1

name	LOC100041282 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149264711 GeneID:100041282
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001476842.1

name	Skiv2l2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21312352 CCDS:CCDS26778.1 GeneID:72198 MGI:1919448
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO:0004386 - helicase activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA] codon_start : 1 product : superkiller viralicidic activity 2-like 2 protein_id : NP_082427.1

name	Dhx29 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:46852276 CCDS:CCDS26779.1 GeneID:218629 MGI:2145374
definition	GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO:0004386 - helicase activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA] codon_start : 1 note : nucleic acid helicase DDXx product : DEAH (Asp-Glu-Ala-His) box polypeptide 29 protein_id : NP_766182.2

name	Ccnu (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124486694 GeneID:218630 MGI:2145534
definition	codon_start : 1 product : uracil DNA glycosylase 2 protein_id : NP_001074531.1

name	EG622408 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:85702306 GeneID:622408 MGI:3648807
definition	codon_start : 1 product : hypothetical protein LOC622408 protein_id : NP_001033003.1

name	EG622422 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94395669 GeneID:622422 MGI:3648570
definition	codon_start : 1 product : similar to CDC20-like protein protein_id : XP_902180.2

name	2310016C16Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21312336 CCDS:CCDS26781.1 GeneID:69590 MGI:1916840
definition	GO_function : GO:0016491 - oxidoreductase activity [Evidence IEA] GO_process : GO:0006979 - response to oxidative stress [Evidence IEA] codon_start : 1 product : hypothetical protein LOC69590 protein_id : NP_081403.1

name	LOC100040666 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040666
definition	number : 1 pseudo : _no_value

name	LOC100040716 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040716
definition	number : 1 pseudo : _no_value

name	LOC100040716 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040716
definition	number : 2 pseudo : _no_value

name	LOC100040716 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040716
definition	number : 3 pseudo : _no_value

name	LOC100040716 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040716
definition	number : 4 pseudo : _no_value

name	LOC667756 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:667756
definition	number : 1 pseudo : _no_value

name	LOC100040640 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149264680 GeneID:100040640
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 7 Proteins product : similar to Electron transferring flavoprotein, alpha polypeptide pseudo : _no_value transcript_id : XR_032049.1

name	LOC668181 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149264700 GeneID:668181
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 365 ESTs, 6 Proteins product : similar to neutrophil cytosolic factor 2 pseudo : _no_value transcript_id : XR_032778.1

name	LOC100041240 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149264707 GeneID:100041240
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 73 mRNAs, 3232 ESTs, 68 Proteins product : similar to tubulin, alpha 2 pseudo : _no_value transcript_id : XR_032859.1

clone name	MSMg01-098O07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-102F20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-416G12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-133G20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-489H17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-312M16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-540F11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-062M18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-344G08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-313C05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-376H05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-336N17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-469K17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-483H05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-527J18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-366J23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-545O12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-185K14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-297O24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-478J10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-465I21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-454M06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-452H08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-135H09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-132E01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-146J17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-070I11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-311D17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-214J12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-460A10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-495C21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-179B03
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-334B16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-478H05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-181M11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-302G16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-342A19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-176C15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-544A10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-454L11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-474C21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-278L17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-542B03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-425K07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-292N24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-296M22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-489O09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-151P17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-074J18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-410B23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-376A07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-278D21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-369L01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-462J16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-410F21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-410J23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-508H21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-385F03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-353G11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-135N10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-046I13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-488D04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-464E06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-354K18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-425M08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-057D21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-158J08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-461C18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-415K11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-478N20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-453N02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-453N03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-392B09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-447F21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-412F19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-363L04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-270G14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-340N07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-416M11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-418B19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-232E23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-088B12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-547F23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-465G18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-098B07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-416G10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-352E08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-137L07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-206F04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-547F23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-199E21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-395E24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-438D09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-349M14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-305D17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-277G16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-116I22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-292E18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-285A11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-315M19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-185P14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-288O05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-226J21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-251B13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-115I14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-283C10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-063M19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-298B16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-134P06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-247M19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-138P17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-241N14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-010D11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-316I01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-091F02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-263A17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-061O07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-252I08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-268K12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-306A02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-188I05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-073I02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-259D23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-318O17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-161N04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-105D05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-230D05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-325L10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-283L08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-143H08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-326F16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-031M22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-054C24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-048P24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-304M08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-071C09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-125K01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-308O20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-319D21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-101K02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-140K08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-163I02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-046M15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-256M21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-297B24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-099F13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-313G21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-207G15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-247I09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-078K17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-198L21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-151N06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-236N14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-260C22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-123I02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-159L19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-173G20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-018A15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-250N01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-313F17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-194D11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-267N22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-224J24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-072A21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-041H03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-066L13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-170E07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-033B04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-034M13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-210G16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-115K22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-321J06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-335O19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-068B01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-345J12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-308H04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-295L07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-328E19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-335M21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-023E06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-048E14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-022M04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-032J23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-095J06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-182C21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-278J11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-051L03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-246K01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-116G04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-110M04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-252P14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-240D02
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-292N24.T7 (MSMg01no292_n24.b1)	MSMg01-292N24.TJ (MSMg01no292_n24.g1)
ACC	AG421477	AG421478
length	760	751
length of high quality (start - end)	131 (46 - 176)	287 (79 - 365)
definition	CHROMAT_FILE: MSMg01no292_n24.b1 PHD_FILE: MSMg01no292_n24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:28:04 2005	CHROMAT_FILE: MSMg01no292_n24.g1 PHD_FILE: MSMg01no292_n24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:28:04 2005
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	CATATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG AATTCCAATTATACTCCATTTACTGGGCAAATATCATCTACAGCTGAGGG CTACTGGCTTCTCACCTTGACACCTGGCTAAGGAACACGGGGGGGGGGGG GAGGACGGNACTTGAGATCCTGATCACATGACGAAAACTACCCCAACACT AAATACTGCTTACCTAATAACTGTCTCATGAATAAAACATGCATCAGACT TACCGAACCCTCTATGTAGTTGGTCCTCTGATATCATAACTTGAACCCAT TGCTTTTCACGCTTGTTTTTTTTTTTAGCTACATTTTTAACAATATTTTC TCAACCTTTTTTTTTTTTCCCCCCCCCCCCCCCGAANCCTGAGCCCCTAT TATGGGCTGGCCCCCCCCCCTTTATAATAAATAAAAATTTGTCGCTTATT CTCATTCTCTTCTTTTGTTTTTTTTACTCCTCCTTCTTTTCATTTTTTTT TCTTCTTCTTTTTCTTCCTATTTTTACTCTTTTTTTTTTTTTCCTCCCCT TTTCCCCCTTTTTTTCTTTTTCTTTTCTTTCTTTTTTTCCTTTTCTTTTC TCCCTTTTTTTTTCTTTTTTTTTTTTTTTCCATTTCTTTCTTCCTTCCAT TTTTTACTTTCTTCATCTCCCCTTTCCTTTTTTTTCTTTTTTTTTTTCTC CTTCTTTTTTTTCTTCTTCTTCTTTTCTCTTGTCCTCTCCCTCCCTTCTC TTTATCTCCT	CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTCTCTTTCCACCACCTACAC AGGAAAGATGGTGGACCTGGTGGGCGTTGTGGTCTATTGCAGAACCTCTT TTCTAGAAAAAGCTCCTTGTGACTTGTGTGTCTCTGAAGACCTGCTTTCC TGCCAAGGAGAAAGGAAAGTTTGATTTGGGCAGAGGTGAAGGAAGAGGCC TCGTATGGACAAACATACATCGGCAGCTATTCCTAGTTCTCCAAGGGAAA CAAATGAGCAGCCCTCTGTGGTTGGCTGAGCCAATACCTCCCAAGCATGT CTGCTCCCTCATCTCCTTATTCTATGACCGCGCCTCCTTATGTTGACAAA AAGGACGTTGGAAATGTGAACCAATAATGCAGGAGGACAGCCATTAGAAA CTAGAAATGGCAAGAAGATGGCTTCTCTACCTCCAGGTAGAGCAATGCTC TGTTAGCCCAGCGGAATCCATTGCAAGTTTCTGGCTCCCAAGTCCTTCAC TGAACAACTATGTGTTGGTTTTAGTTACCAAGTATTGTTTAAGGCATAGG AAGCACATGTATCCCTTCTATCTCCTTGACCCTTTCCGGGGCAGGCAATT TGTTCTCCCTTGTTTTCTGGAAATCTCTTATTTTGCTTCGTATACCTTCC CTTTTCATCTCTGTTTTCTCACCACCTCCCTCCCTTTCTTACTTCACCGC G
quality values	Open. Hide. 6 6 8 8 17 12 11 15 22 34 32 29 28 28 22 22 30 23 23 25 24 28 28 37 59 25 23 28 28 19 22 10 9 9 9 9 10 12 21 24 18 18 17 18 22 23 43 47 47 31 31 31 31 44 39 33 33 28 22 21 17 11 9 8 7 7 8 19 19 30 40 40 41 43 48 39 47 47 53 53 57 48 48 48 48 48 48 48 50 50 48 48 50 50 57 57 57 57 57 59 59 59 59 57 57 57 57 59 59 59 36 33 33 33 33 30 34 34 19 15 10 10 12 15 23 30 59 59 50 50 50 50 50 50 53 53 57 57 57 59 59 59 43 43 48 59 59 59 47 36 36 33 30 28 27 21 21 3 0 3 21 21 21 23 11 11 11 23 23 33 33 33 33 25 25 11 11 11 13 10 8 8 8 8 8 16 18 40 33 39 28 24 18 11 11 15 15 19 15 21 12 10 10 10 10 19 24 22 25 25 36 36 39 44 36 28 25 24 28 36 37 46 44 54 57 57 42 37 24 13 10 9 9 9 10 13 32 20 18 18 13 13 13 15 15 10 12 23 23 25 32 15 15 11 10 12 10 12 9 13 17 36 24 37 28 18 20 12 11 11 18 10 10 13 10 10 11 12 12 11 11 15 10 10 11 12 12 11 11 11 21 21 20 20 20 24 22 27 12 14 14 28 28 47 59 30 21 8 8 8 8 8 15 13 13 9 10 10 12 12 10 10 9 10 10 11 9 7 8 8 8 8 9 18 21 11 11 12 9 9 10 10 15 19 24 28 30 37 37 37 24 22 20 12 9 12 8 8 9 11 11 11 26 24 24 16 16 11 10 14 8 15 12 19 15 15 18 18 18 11 10 10 9 9 9 3 0 3 11 18 22 11 11 11 22 18 24 25 25 25 29 23 19 12 9 9 9 9 9 9 9 10 17 19 27 27 15 13 8 8 8 12 8 8 8 10 8 8 9 11 8 8 8 10 8 10 10 10 13 10 8 8 8 11 10 8 8 8 10 10 9 9 9 10 10 10 8 10 7 7 8 8 8 13 10 11 9 9 19 19 16 9 8 8 8 6 6 8 8 10 10 10 8 8 8 8 10 8 10 8 8 8 6 8 8 9 9 10 8 19 15 19 11 10 8 8 8 8 8 8 6 6 8 8 8 19 12 8 8 6 7 10 13 10 9 9 9 9 12 11 12 19 15 9 9 9 17 16 15 9 9 9 8 8 13 12 13 11 10 8 9 9 10 10 12 19 14 10 11 9 9 10 11 13 11 11 11 15 18 21 13 12 11 12 10 10 8 12 8 8 10 10 13 15 16 14 12 10 10 9 10 10 8 8 8 8 8 8 8 8 8 8 8 10 13 12 12 14 26 23 24 17 10 10 10 13 15 22 22 13 12 15 12 12 12 14 14 9 9 11 8 12 12 15 10 10 10 10 8 8 8 12 10 12 12 10 8 10 11 15 16 14 11 11 8 8 8 8 10 12 9 7 10 8 8 8 8 8 8 9 10 10 13 15 8 8 8 8 8 13 13 14 10 13 9 10 10 15 11 16 9 9 10 10 10 10 10 10 10 10 10 10 10 14 16 28 28 33 24 24 20 15 12 9 10 9 9 14 9 9 9 8 8 10 10 10 8 8 8 10 8 9 6 8 6 6 6 6 8 12 12 12 10 10 8 8 10 12 10 8 8 10 8 9 8 8 8 8 12 8	Open. Hide. 12 12 9 13 14 9 11 10 11 23 19 35 32 37 41 41 37 50 39 44 50 53 53 50 50 50 50 47 37 25 25 11 6 6 6 6 6 7 10 12 10 19 19 32 26 48 48 53 53 53 36 36 36 36 42 42 53 53 53 28 27 8 8 8 10 10 12 23 24 39 37 37 29 32 42 42 50 51 68 68 68 68 68 68 68 68 50 50 50 50 50 50 68 68 68 68 68 50 50 51 50 50 50 68 68 50 51 50 50 50 51 57 68 68 68 68 68 68 68 68 59 59 43 43 27 27 27 43 44 50 57 68 68 68 68 68 68 68 68 68 68 68 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 28 28 20 20 18 34 27 43 47 59 59 68 68 57 57 57 57 57 57 59 59 59 59 59 59 59 59 59 59 57 50 50 50 50 47 42 42 32 32 15 20 11 11 10 10 10 10 10 12 15 21 22 21 18 14 12 10 10 10 10 10 15 18 23 34 34 47 59 59 48 59 59 57 57 48 48 57 57 59 48 57 57 48 48 48 57 59 53 50 50 50 46 41 25 16 11 12 12 12 12 12 13 18 26 24 23 12 12 10 8 8 8 8 8 10 15 21 30 34 48 43 34 34 23 23 32 34 39 48 41 41 46 47 59 59 44 36 32 35 36 36 37 37 30 30 14 26 23 34 34 37 37 39 41 41 43 43 43 48 43 43 43 39 39 37 37 28 28 23 28 28 43 37 37 30 30 30 34 34 32 29 33 32 32 35 47 47 37 37 31 25 25 37 32 32 36 39 39 39 37 36 36 28 23 24 24 28 28 33 43 41 32 32 20 28 28 28 16 20 19 18 23 30 27 30 22 22 23 30 30 26 17 17 17 22 22 23 28 31 28 28 28 34 24 22 22 27 25 30 37 30 24 26 19 15 14 13 14 12 16 17 20 16 14 9 9 10 11 12 21 19 17 12 12 8 8 8 10 10 10 10 10 10 19 10 14 14 21 27 32 32 32 33 37 25 19 10 10 10 12 10 12 12 12 9 8 8 8 8 10 10 11 9 11 11 8 10 10 13 13 13 10 8 9 9 9 8 6 6 6 6 8 8 10 10 19 13 12 8 9 9 9 15 15 15 11 11 10 10 12 11 15 22 23 10 10 8 8 8 10 12 13 9 9 10 9 11 10 10 10 10 9 9 8 15 15 17 12 11 15 9 9 9 9 9 11 11 17 8 8 8 8 8 8 10 10 8 8 8 8 8 7 6 8 8 8 8 8 10 9 8 8 8 8 10 10 18 9 9 9 8 8 8 8 8 8 8 8 8

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no292_n24.g1 MSMg01no292_n24.g1 CHROMAT_FILE:
MSMg01no292_n24.g1 PHD_FILE: MSMg01no292_n24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:28:04 2005
         (287 letters)



>mm_chr13_112843445_112844131
          Length = 687

 Score =  547 bits (283), Expect = e-160
 Identities = 286/287 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctctctttccaccacctacacaggaaagatggtggacctggtgggcgttgtggtctatt 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 tctctctttccaccacctacacaggaaagatggtggacctggtgggcgctgtggtctatt 260

                                                                       
Query: 61  gcagaacctcttttctagaaaaagctccttgtgacttgtgtgtctctgaagacctgcttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcagaacctcttttctagaaaaagctccttgtgacttgtgtgtctctgaagacctgcttt 320

                                                                       
Query: 121 cctgccaaggagaaaggaaagtttgatttgggcagaggtgaaggaagaggcctcgtatgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctgccaaggagaaaggaaagtttgatttgggcagaggtgaaggaagaggcctcgtatgg 380

                                                                       
Query: 181 acaaacatacatcggcagctattcctagttctccaagggaaacaaatgagcagccctctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acaaacatacatcggcagctattcctagttctccaagggaaacaaatgagcagccctctg 440

                                                          
Query: 241 tggttggctgagccaatacctcccaagcatgtctgctccctcatctc 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggttggctgagccaatacctcccaagcatgtctgctccctcatctc 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information