BAC Information

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BAC

Clone NameMSMg01-292O14
Chromosome13 (Build37)
Map Location 118,285,132 - 118,285,405
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041169, Parp8, LOC668288, LOC623312, Emb, EG623365, LOC382807
Downstream geneHcn1, LOC100041695, LOC674926, Mrps30
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-292O14.T7 (MSMg01no292_o14.b1)MSMg01-292O14.TJ (MSMg01no292_o14.g1)
ACCAG421501AG421502
length764803
length of high quality
(start - end)
275 (46 - 320)242 (77 - 318)
definitionCHROMAT_FILE: MSMg01no292_o14.b1 PHD_FILE: MSMg01no292_o14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:28:07 2005CHROMAT_FILE: MSMg01no292_o14.g1 PHD_FILE: MSMg01no292_o14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:28:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAAGCAGATATCATATATTTGTTAATAAACTAATATCCTGTCAAG
TTTACAAATATAGACCTGTTCATTCTATTCTAATAATTTAATGTTTACAT
ATTTCTGTAGGTCCTCATTTTGTAGTTTTTATTCTTATTAAAATGTATTG
TATGCTATATTTTGATTATATTTTTTCACCTCCCACAATTCCTCTAAATC
TTTCCTACTCATATTTCTTTATGCTTTTCTCTTTATCAAAAAAAAAATCC
AAACAGACTAAGAGTAATCCATTTTTTCTGACTGTTACAATATTTTTTCT
CTACTACATTGTTCNCTAANTCTCCAGACGGGCCCCGTGATAATCCTATA
CTATTTAGATCGGAGCCCCCCAAAAAAAAAAAAAAAAAAACCCCGTGCGG
GTATGGGTCTCTGTATTAAATACCGTCTCCTGAAACAAGAATTAAAAGTT
GAGTGAAAAGAGGCTCTGTGACTATAACATATCATTAGAAGCCATTTTGT
TCTTGTGTTCCTTGACCAATATAAGATTTGCACTTTTTCTCTTGATTTTA
TTGATTTCTTTCCCCTGTTTCCCCCCCACCTCATTTTTGCCTTAACTGAA
AACCCCTCTTTTTTTTTTTCACNTTTTATCCCCACTCTATCTCCGTTTTC
CCCTCTACTCTTATCCTTGTGTTAATTCCCACTCCACTTTCTTTTTGTCC
TATGACTCGTTGTT
TCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTACATCTTGTTCTGAAGGCAAACA
GGAGAAGACTGGCTCCCAAGTGGCTAGGAGGAGGGTCTCAAAGCCCACCC
CCACAGTGACACTTCCTCCAACAAGGCCACACCTACTACAGCAAAGTCTC
ACCTCCCAATAGTGCTACTCCCCTGACCAAGCATATATAAACCACCACAG
TGGTGTTTTGGGGTACGATTAGGAGGTGTGGCCTTGCTGGAGGAATGTCA
CTGGAGGCAGCCTTTAAGATTTCTTATTCTACACAGCAGTCCTAGTCTAC
TCTGTTTGCTTCTTTTTTTTTTTCCCCCCCCCCCCCCCCATTATCTGTTT
TATTCATCAAGAAAGCCCCCCCCCTCCAAAAAAAAAAAAATATGTTGCGC
GGGGTTGGGACTTGTTATTTACTCATTTCCTAATCTTTTCGATCTGAAAA
GCTTTTTTCTTCTATTATTCTTACAACTTTTATTTTCATTTCTTTGCTTT
TTTTTCTTTTGCTCTCCTCTTTTATTTTCTATTATTTATTAAAATCTTTA
ACTTTCTTTTTTTTCTTCTTCCAACCCCCCTTACTTTAGTCTCCTCTCCT
TACTTCTCTTTCTCACCATTCTTTCTTTTCCCTCTTCCTTTTGAACATCC
AAAAGATATGTGGGTTTCTTCTGTTCTTGTTCTACATTATCCATCTTGTT
GTTCTTCCACTAAACATCCTTCTGTACTTTAGATTTCCCCCCCCTTCTTT
TTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no292_o14.b1 MSMg01no292_o14.b1 CHROMAT_FILE:
MSMg01no292_o14.b1 PHD_FILE: MSMg01no292_o14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:28:07 2005
         (275 letters)



>mm_chr13_118284929_118285605
          Length = 677

 Score =  503 bits (260), Expect = e-147
 Identities = 270/274 (98%), Gaps = 2/274 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccaagcagatatcatatatttgttaataaactaatatcctgtcaagtttacaaa 63
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 ggaattccaagcagatataatatatttgttaataaactaatatcctgtcaagtttacaaa 418

                                                                       
Query: 64  tatagacctgttcattctattctaataatttaatgtttacatatttctgtaggtcctcat 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 tatagacctgttcattctattctaataatttaatgtttacatatttctgtaggtcctcat 358

                                                                       
Query: 124 tttgtagtttttattcttattaaaatgtattgtatgctatattttgattatattttttca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 tttgtagtttttattcttattaaaatgtattgtatgctatattttgattatattttttca 298

                                                                       
Query: 184 cctcccacaattcctctaaatctttcctactcatatttctttatgcttttctctttatc- 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 297 cctcccacaattcctctaaatctttcctactcatatttctttatgcttttctctttatca 238

                                             
Query: 243 -aaaaaaaaaatccaaacagactaagagtaatcc 275
            |||||||||||||||| ||||||||||||||||
Sbjct: 237 aaaaaaaaaaatccaaaaagactaagagtaatcc 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 275
Length of database: 677
Length adjustment: 9
Effective length of query: 266
Effective length of database: 668
Effective search space:   177688
Effective search space used:   177688
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)