BAC Information

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BAC

Clone NameMSMg01-294E17
Chromosome13 (Build37)
Map Location 97,393,090 - 97,393,317
singlet/doubletsinglet
Overlap geneCol4a3bp
Upstream geneIqgap2, F2rl2, Sv2c, LOC667582, 1200014M14Rik, 9330128J19Rik, Polk
Downstream geneHmgcr, LOC100039456, LOC625662, 1700029F12Rik, EG620648, 5730427N09Rik, LOC100039663, Gfm2, Hexb, Enc1, LOC667676, LOC100039691, LOC100039704, EG328314, LOC100039526
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-294E17.T7 (MSMg01no294_e17.b1)MSMg01-294E17.TJ (MSMg01no294_e17.g1)
ACCAG422506AG422507
length727725
length of high quality
(start - end)
231 (132 - 362)42 (73 - 114)
definitionCHROMAT_FILE: MSMg01no294_e17.b1 PHD_FILE: MSMg01no294_e17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:29:57 2005CHROMAT_FILE: MSMg01no294_e17.g1 PHD_FILE: MSMg01no294_e17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:29:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTCATTATTCACACTGACCCACACAAAGCCGAGGTCAGAGGTCAGAGG
CACGTGTCTTTTTCTAGCCCGCACCTAGAGTTGTCTTTCTGCTTTTTGTT
TTTTTCTAATTAAAGCTTTATACAATTTTAGATTATATCATTGGCAAGAT
TGATTAGTTAATTAATACTGAGGCTCAAAACTAAAAGGACAAAATTATAG
AATGTACTATTAGGTATATTATTAAGTTCCTCAACTCTAAAATCTATAGT
CACTCACATTGTCTTAAGAATTATTAGTAACTGGGCATTAGTGGTGGCAC
ACGCCTTTATTCTCAGCACTCGCCCACCCCAGAGGCAGGCAGATTTCTGA
GTTCTAGGCCAGCCTGCCCTACAAAGTGAAATCCAGGACAGCCAGGGCTA
TGTTTCAAAAAACCAAAATAAATAAATAAACCAAAATAAAAAATTATATG
TGTGTATGCGTATTACTACACTACTAACATGTTGTTATTATTTAGTATAA
AATTTTGGAGTCAGTTTTAACAATTTGGCAAAATTCTTTTGGATGATTGT
CGAATCAAGATTGATATAACAGAAGTGTACATCTCTATAACATATTGAGG
ACATTCCTAAGTATAGGAAATTATGAACTATTATTAGTGTTTTTAAGAGT
TTATGCCTCATAACCATTATTTCCACT
GACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTAGTAGTTCTAAAAAATAAATTAACT
AATTAACAACACCATATTTCCAAATGCAAAGAAAACAATTTTGGTTACAT
CATTCTAATTACTGTCTAACAAGTAAGGGTGGCAAGCTTAGAGAAAATGG
TTCTATCTTCAAATGATGGTTTGGCATTAGAGTTTTGATATAAGTGGATG
CCATGCAAGGAATTTCTCAGCTATTTTTTCCTACTTTTGTATTTCATATC
AAATATAAAGGGGGTAAAAATATTGAAAGAAAGAGAATTAATACTAAATA
AAGGTTATGTTGTATATGCCCCCCCTCCCCCTCTACTTGGAGGTAATTAA
AAACTGAATGAAATACACCTCAAACAGATAAAATATTTCTTCGTAGGGAC
TTATTGCATAATTTCAAAGGGCGTTTTTCCTGTTTAAAATAAAAGATCTA
CTTGCTTCAGGTGCTTTAACAATAGTTTTTAATGTACTAGGCATTGTTAT
TTAAATCCTATGCAAGAATAAAAAATATAGCATATCCTTCTGTCCAAAGT
GGTCAATAGATGTTAGGTTGAAAATGTTGACTAAACCCTTCAAACAGAAT
GATAATTTCTGGAAAGCTAACCGGATAGAATGCCATACTTGAGAAGAATA
AATTAACTGTGAACAAGATAAACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no294_e17.b1 MSMg01no294_e17.b1 CHROMAT_FILE:
MSMg01no294_e17.b1 PHD_FILE: MSMg01no294_e17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:29:57 2005
         (231 letters)



>mm_chr13_97392890_97393520
          Length = 631

 Score =  441 bits (228), Expect = e-128
 Identities = 228/228 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtctttctgctttttgtttttttctaattaaagctttatacaattttagattatatcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtctttctgctttttgtttttttctaattaaagctttatacaattttagattatatcat 260

                                                                       
Query: 61  tggcaagattgattagttaattaatactgaggctcaaaactaaaaggacaaaattataga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggcaagattgattagttaattaatactgaggctcaaaactaaaaggacaaaattataga 320

                                                                       
Query: 121 atgtactattaggtatattattaagttcctcaactctaaaatctatagtcactcacattg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgtactattaggtatattattaagttcctcaactctaaaatctatagtcactcacattg 380

                                                           
Query: 181 tcttaagaattattagtaactgggcattagtggtggcacacgccttta 228
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcttaagaattattagtaactgggcattagtggtggcacacgccttta 428


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 231
Length of database: 631
Length adjustment: 9
Effective length of query: 222
Effective length of database: 622
Effective search space:   138084
Effective search space used:   138084
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)