BAC Information

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BAC

Clone NameMSMg01-294J01
Chromosome13 (Build37)
Map Location 102,281,874 - 102,282,133
singlet/doubletsinglet
Overlap genenone
Upstream geneOcln, LOC667861, Marveld2, Rad17, Taf9, Ccdc125, Cdk7, Mrps36, Cenph, Ccnb1, Slc30a5, LOC619865, LOC619917, EG619937, 4933416M06Rik, LOC100039971, LOC100039983
Downstream genePik3r1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-294J01.T7 (MSMg01no294_j01.b1)MSMg01-294J01.TJ (MSMg01no294_j01.g1)
ACCAG422704AG422705
length684734
length of high quality
(start - end)
268 (47 - 314)293 (80 - 372)
definitionCHROMAT_FILE: MSMg01no294_j01.b1 PHD_FILE: MSMg01no294_j01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:16 2005CHROMAT_FILE: MSMg01no294_j01.g1 PHD_FILE: MSMg01no294_j01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGAT
CCGCGGAATTCAGTATGATTACAAAAACAATGAGTTAGGAAGCCCCTATT
CCAGAGGTTCAGCCAGGCTTTACCATACTGGGAACTTGATGAATGATTTG
TGCAAGCATGCAGTTTTCCCCAAACTCCAGGTTCTCCAGCAACATATTGA
AGTTGATAGTGTCTTCCTTTTCAGACCTGCTGCAGTGGGATGAAGCAATG
CATCTCTAACATCCTCACAGCACATGTTACCTAAGTATGAATAGGTCATT
CAAAACTAAAAGAGCCTGCCACAGCAGTAGGTTCCGGTGTACTTGGGCCA
TCAAACCTTTGGAACATGCTACCTGCCTTCTCATTCCTATCAACAGCAAG
AAAATGTTGGATTTTTGTGGACACAGATGCTGGAATGTTTTCTCTGCACC
CAGGAAATATTAAGGAGGGAGAGAAGACGTTATTTCACAGATTCGTTCTC
TCATGTTCCTGAGCATGTAGGTTTATCTCTGAAATGTGTTGGGGTGATGT
GGGCCTGGCNTCCTAATATAAATTCATTGGCCACTTGGGGTCAAGAGAAA
AAACAATATTCTGCGAAGCGTGCTTTTGCCCTTCTCGAAAAGAATATAGA
AAAAACCACTTTAAACCCGGGCCCCTTGGCAAAA
AATCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACATTTACCAGCTTTTGTT
GCGCAAACCTTGATCCTTGATTTAAAACTCACTTGATTAAACAAAAATAG
CTACAGCCAATTACTGGAGGGATTAGAGATACATAGATTCTTGAGTTACC
TGGTTGCACGTGCAGAAAGGGAATGAGAAAGGAGAGAATGAGGGGGAGAG
AGAAGAAGAATCCACGAGAGTAGAGGCACCACGAGCACGTGGCCAGGAGA
AGCAGCAAGTATTTGGGGTACACCGCTGGGGTACCCCAGTGCCAGCAGTT
AGGGGAGCAGATTAGGGTTTATCTTTCTTTACCCCGCCACACCCAAATAA
AATAACCATAGTCTGCGTCTCGTTTATCTTTAAGCTTCTTGAAAATAAGC
TTAGATTGGTTGTACTACACACATATGCATAAATATATAAATAACTCTCC
CAAACTCCTTTAATGCTGCTTGTGTGTATATGATTTGGGAGCTGAGCACT
TGGTATTATAGAACTAATTAGGAGGCTTGTCTCTGGGGAAGAGTCTTCCT
CTCTCCTAACAGTCATTAGACTGTGTCTCCTAGAAATGATAGTGAAGCTG
TACCCATGAGATTGCAGCAATATGGCTGCCTAACAAGACCTGTACCCTGA
CCCCCCCCCGCTAGTAGACAAGCTAATGTGGAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no294_j01.b1 MSMg01no294_j01.b1 CHROMAT_FILE:
MSMg01no294_j01.b1 PHD_FILE: MSMg01no294_j01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:16 2005
         (268 letters)



>mm_chr13_102281665_102282333
          Length = 669

 Score =  464 bits (240), Expect = e-135
 Identities = 255/260 (98%), Gaps = 1/260 (0%)
 Strand = Plus / Minus

                                                                       
Query: 10  gaattcagtatgattacaaaaacaatgagttaggaagcccctattccagaggttcagcca 69
           ||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 469 gaattcagtatgagtaaaaaaagaatgagttaggaagcccctattccagaggttcagcca 410

                                                                       
Query: 70  ggctttaccatactgggaacttgatgaatgatttgtgcaagcatgcagttttccccaaac 129
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 ggctttaccatactgggaacttgatgaatgatttgtgcaagcatgcagttttccccaaac 350

                                                                       
Query: 130 tccaggttctccagcaacatattgaagttgatagtgtcttccttttcagacctgctgcag 189
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 tccaggttctccagcaacatattgaagttgatagtgtcttccttttcagacctgctgcag 290

                                                                       
Query: 190 tgggatgaagcaatgcatctc-taacatcctcacagcacatgttacctaagtatgaatag 248
           ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct: 289 tgggatgaagcaatgcatctcttaaaatcctcacagcacatgttacctaagtatgaatag 230

                               
Query: 249 gtcattcaaaactaaaagag 268
           ||||||||||||||||||||
Sbjct: 229 gtcattcaaaactaaaagag 210


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 268
Length of database: 669
Length adjustment: 9
Effective length of query: 259
Effective length of database: 660
Effective search space:   170940
Effective search space used:   170940
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)