Query= MSMg01no294_l02.b1 MSMg01no294_l02.b1 CHROMAT_FILE:
MSMg01no294_l02.b1 PHD_FILE: MSMg01no294_l02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:26 2005
(320 letters)
>mm_chr13_59216188_59216911
Length = 724
Score = 582 bits (301), Expect = e-171
Identities = 313/319 (98%), Gaps = 4/319 (1%)
Strand = Plus / Plus
Query: 5 gaattcttgtgtctcgatccaaaagaaatttcctgccatcactgtgactgcagccgcaca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttgtgtctcgatccaaaagaaatttcctgccatcactgtgactgcagccgcaca 264
Query: 65 ctctaatgggagaagatgtattactttccctcaaagtcaaatgcaaaccaagaagaaagc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctctaatgggagaagatgtattactttccctcaaagtcaaatgcaaaccaagaagaaagc 324
Query: 125 cgtaacaactcaaaccaagaactctaggccctttagacgatgaacagtgcacaagccgat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cgtaacaactcaaaccaagaactctaggccctttagacgatgaacagtgcacaagccgat 384
Query: 185 ggcacagagctcagccctaaactatgggtt----gaggtcatggggactctaggcagcta 240
|||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 385 ggcacagagctcagccctaaactatgggttacttgaggtcatgggaactctaggcagcta 444
Query: 241 ttgtgccttgtcccatcttgttaggagattccagggtcttcccactctcccttagctaca 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttgtgccttgtcccatcttgttaggagattccagggtcttcccactctcccttagctacg 504
Query: 301 ctgaggaaacttgggcaga 319
|||||||||||||||||||
Sbjct: 505 ctgaggaaacttgggcaga 523
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 724
Length adjustment: 9
Effective length of query: 311
Effective length of database: 715
Effective search space: 222365
Effective search space used: 222365
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no294_l02.g1 MSMg01no294_l02.g1 CHROMAT_FILE:
MSMg01no294_l02.g1 PHD_FILE: MSMg01no294_l02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:26 2005
(520 letters)
>mm_chr13_59387394_59388313
Length = 920
Score = 893 bits (462), Expect = 0.0
Identities = 489/500 (97%), Gaps = 4/500 (0%)
Strand = Plus / Minus
Query: 21 agttgtataaattagaattattattatttttcactcacgagtatgctcagcaaaatacaa 80
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 920 agttgtataaattagaattattattatttttaactcacgagtatgctcagcaaaatacaa 861
Query: 81 acctattctatcaataaaaacttgctaggaatatttccaagttaaaccctgctaggatat 140
| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 860 atctattctatcaataaaaacttgctaggaatatttccaggttaaaccctgctaggatat 801
Query: 141 taattaacttttttgtgcctaaacttaaaagacagttgtgtttgaaattgttgaccagtg 200
|||||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 800 taattaacatttttgtgcctaaacttaaaagactgttgtgtttgaaattgttgacca--- 744
Query: 201 tgtgtgtgtgtgtgtgtgtgtgtgcacatatatacgacgtgtaaatactatgcatgaata 260
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 -gtgtgtgcgtgtgtgtgtgtgtgcacatatatacgacgtgtaaatactatgcatgaata 685
Query: 261 ttacattatgaatctatacatatgtatgcatacacatgaatttatatttaggagaaaaat 320
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tcacattatgaatctatacatatgtatgcatacacatgaatttatatttaggagaaaaat 625
Query: 321 taagtccattatcacttcttggaagccctgctggttttaatgaaagtggatgatttcagt 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 taagtccattatcacttcttggaagccctgctggttttaatgaaagtggatgatttcagt 565
Query: 381 tgaataattggcttgttacaaaacagaatgttcaaaatgaacgactttcaaaaattgaaa 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tgaataattggcttgttacaaaacagaatgttcaaaatgaacgactttcaaaaattgaaa 505
Query: 441 cagctaaggaaaaacaaatagaaggtaatgatattttttatctttaatgggttagaatgc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 cagctaaggaaaaacaaatagaaggtaatgatattttttatctttaatgggttagaatgc 445
Query: 501 ttccgtaagtcgctgatttg 520
||||||||||||||||||||
Sbjct: 444 ttccgtaagtcgctgatttg 425
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 920
Length adjustment: 10
Effective length of query: 510
Effective length of database: 910
Effective search space: 464100
Effective search space used: 464100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
