Query= MSMg01no295_b16.b1 MSMg01no295_b16.b1 CHROMAT_FILE:
MSMg01no295_b16.b1 PHD_FILE: MSMg01no295_b16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:56 2005
(319 letters)
>mm_chr13_39103950_39104668
Length = 719
Score = 551 bits (285), Expect = e-161
Identities = 306/313 (97%)
Strand = Plus / Plus
Query: 5 gaattcatggaaacatcctataatttaaaggtaaacatctataggatgaaattagaacac 64
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatggaaacatcctattatttaaaggtaaacatctataggatgaaattagaacac 264
Query: 65 ttccctcaaatcaaaacctttcaacttgagctacttattactcagtctaattgcctcatt 124
||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 265 ttcactcaaatcaaaacctttcaacttgagctacttactactcagtctaattgcctcatt 324
Query: 125 ctagaaattacagggagaacgaaatccagactaattctaggacttgctcaagactgcaga 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctagaaattacagggagaacgaaatccagactaattctaggacttgctcaagactgcaga 384
Query: 185 gtagaagacagcgagcgtttgactagcgaacacttcttaactgaatgctcgcaggtgcca 244
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtagaagacagggagcgtttgactagcgaacacttcttaactgaatgctcgcaggtgcca 444
Query: 245 agtgtggtctcggccacggggatacagtagccagcacaaggggtttgtccacgagctcac 304
||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 445 agtgtggtctcgggcacggggatacagtagccagcacaaggggttcgtccacgagctcac 504
Query: 305 agcattcatgttt 317
|||| ||||||||
Sbjct: 505 agcactcatgttt 517
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space: 220100
Effective search space used: 220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no295_b16.g1 MSMg01no295_b16.g1 CHROMAT_FILE:
MSMg01no295_b16.g1 PHD_FILE: MSMg01no295_b16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:56 2005
(289 letters)
>mm_chr13_39234595_39235286
Length = 692
Score = 534 bits (276), Expect = e-156
Identities = 284/288 (98%), Gaps = 3/288 (1%)
Strand = Plus / Minus
Query: 1 agagattttttttaatcctctgctttgaaaaggggattcactttgattctgaatcatatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 agagattttttttaatcctctgctttgaaaaggggattcactttgattctgaatcatatc 429
Query: 61 ttaaaatatggtaacgaaaacaagcaatcacctataatt---atgatacttagtcctaaa 117
||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 428 ttaaaatatggtaacgaaaacaagcaatcacctataattatgatgatacttagttctaaa 369
Query: 118 agcaataatgggataacttgaggtaagtgtgtgcacgaatattaattagaccattttatt 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 agcaataatgggataacttgaggtaagtgtgtgcacgaatattaattagaccattttatt 309
Query: 178 tcattaacagttaaaatagttgtccttccgttgatataagttcctcacaattcagaacat 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 tcattaacagttaaaatagttgtccttccgttgatataagttcctcacaattcagaacat 249
Query: 238 tggatgttattttgcaacttttaccaagaagattgtaaattgttgcag 285
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tggatgttattttgcaacttttaccaagaagattgtaaattgttgcag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 692
Length adjustment: 9
Effective length of query: 280
Effective length of database: 683
Effective search space: 191240
Effective search space used: 191240
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
