Query= MSMg01no296_d09.b1 MSMg01no296_d09.b1 CHROMAT_FILE:
MSMg01no296_d09.b1 PHD_FILE: MSMg01no296_d09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:32:20 2005
(329 letters)
>mm_chr13_42686580_42687308
Length = 729
Score = 499 bits (258), Expect = e-145
Identities = 296/320 (92%), Gaps = 19/320 (5%)
Strand = Plus / Minus
Query: 21 ttcatgttctacaaagataccatgttgttctatatgagggaattgaacaccagggtgatt 80
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 ttcatgttctacaaagataccatgttgttctatatgagggaattgaacaccagggtgatt 489
Query: 81 tgtttccttgtgggggccctggaaacaagcctaggtcctagcaatactaaggatggtctg 140
||||| |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 488 tgtttacttgtgggggccctggaaacaa-------tcctagcaatactaaggatggtctg 436
Query: 141 ctcaaccaaaggtgcatgcaatctacattaggatttaccactttggaaattttttgtcaa 200
|||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 435 ctcaaccacacgtgcatgcaatctacattaggattttccactttggaaattttttgtcaa 376
Query: 201 tgctaatctatagatttgttcattaagaatgaattcgttaagagtgccatcagacaca-- 258
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 tgctaatctatagttttgttcattaagaatgaattcgttaagagtgccatcagacacata 316
Query: 259 ----------taaaaccaccaagatcagaattggtatatgatttactcttcttccatgta 308
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 ggcacaaatttaaaaccaccaagatcagaattggtatatgatttactcttcttccatgta 256
Query: 309 gcctaaaacttaatcatcta 328
||||||||||||||||||||
Sbjct: 255 gcctaaaacttaatcatcta 236
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 729
Length adjustment: 9
Effective length of query: 320
Effective length of database: 720
Effective search space: 230400
Effective search space used: 230400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no296_d09.g1 MSMg01no296_d09.g1 CHROMAT_FILE:
MSMg01no296_d09.g1 PHD_FILE: MSMg01no296_d09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:32:21 2005
(289 letters)
>mm_chr13_42514142_42514830
Length = 689
Score = 507 bits (262), Expect = e-148
Identities = 280/286 (97%), Gaps = 2/286 (0%)
Strand = Plus / Plus
Query: 1 aattcatctggccaccaaggtacctgcactcacgtaccatgctactgaccacacaatgga 60
|||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct: 201 aattcatctggccaccaaggtacctgcactcatgtaccatgctactgactacacaatgga 260
Query: 61 aagtatttaaaacaaagtttgctctgtcagccctctcagatgctcatctcatcaagctgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagtatttaaaacaaagtttgctctgtcagccctctcagatgctcatctcatcaagctgc 320
Query: 121 caagcacatggttttctctttgcaaaaggaacatcagaacttcaaacctttttcttcatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caagcacatggttttctctttgcaaaaggaacatcagaacttcaaacctttttcttcatg 380
Query: 181 caagctctggcttgtgcagcagcctcttggacgagggtgatacagactctgagtacttat 240
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 381 caagctctggcttgtgcagcagcctcttggacaagggtaatacagactctgagtacttat 440
Query: 241 cactgt-aatcaaattacacttcaccttccactcgtcaaaggaata 285
|||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cact-tgaatcaaattacacttcaccttccactcgtcaaaggaata 485
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space: 190400
Effective search space used: 190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
