BAC Information

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BAC

Clone NameMSMg01-296J11
Chromosome13 (Build37)
Map Location 9,991,892 - 9,992,205
singlet/doubletsinglet
Overlap geneChrm3
Upstream geneGtpbp4, LOC667721, Larp5, EG667727, LOC100039719, Dip2c, LOC666986, Zmynd11, LOC100039604
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-296J11.T7 (MSMg01no296_j11.b1)MSMg01-296J11.TJ (MSMg01no296_j11.g1)
ACCAG424160AG424161
length741740
length of high quality
(start - end)
317 (43 - 359)282 (77 - 358)
definitionCHROMAT_FILE: MSMg01no296_j11.b1 PHD_FILE: MSMg01no296_j11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:32:49 2005CHROMAT_FILE: MSMg01no296_j11.g1 PHD_FILE: MSMg01no296_j11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:32:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTGGGAGCAATCTCATTTTCAGAGAGAATTTTTCCTCAAGGTGGCTGGT
AGTGGTATGAATTCAGGCAGTTTGGATAAAGCTATCCCCATATGGCACAA
GGGCTCTATGAAGTGCAGATGGAGGCTTGGCAATCAGTACTAATCAGAAG
CTGTGTAGAAGATTGAAAGAAGCTGGCAAAGGCTGGAGAAAGCAAAAAAG
TATCAAATCTCATAAGCCAAGAAAAAAAAGAGTGTCGATTCTTGAGAAAG
TCAGAATAAGAAGCACTAAGAGTGGCAAATTCCAAGGACCTCAGGTAGTT
CAAAGAGGTGTTTTTATGAGCACCGCCCCACTTCAGCCTGGTCCAGCAGG
CCCATGCTGAGAGGAAATAGGAATGACTGCCTCCGGGGAATCTTAATGAA
CTTGAGAATCAGCCGCCCCATGCACTTCCTTTCTTCAGCTCTGGCTTTCA
TGAGTGGTCTGCCCCGAAGTTGTGCCTTCACACATCAGTCGCCATTTTCT
GTGTGTGATCATATAAAGTTAATCCTATTTGCAGTGCATATCTGGGGACA
GAGTGAGGCAAAATGTGGATATAGATAAATATACTCTTGATATGAAGAGT
CACTTCCCTATAATTCTTAAATCATATAATAGTCTTTTCCCCCCTGAATC
TTATCTGAGACAAACAGGAAAACTAGAAAGCAAGTGAACTG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTAATCTTTCCAAGACTTTTATCA
TGAATGGGTGTTGGATCTTGTCGAATGCTTTCTCTGCATCTTAGGAAATG
ATCATGTGGTTTTTGTCTTTGAGTTTGTTTATATAATGGATTACATTGAT
GGATTTCCTTATATTAAAACATCCCTGCATCCCTGGAATAAAACCTACTT
GGTCAGGATGGATGATTGCTTTAATGTGTTCTTGGATTCAGTTAGTGAGA
ATTTTATTGAGTATTTTTGCTTCTATATTCATAAGGGAAATTGGTCTGAA
GTTCTCTATGNNNGTTTGGTTCCCTNTNGCGNTCCCCGTATCAGAGTAAT
TGTGGCTTCATAGAATGATTTGGGAAGAATAAAAAAAACTTCTATTTTTG
GGAATAGTTTGTGCAGAACTGGAATTAGATCTTCTTTGAAACTCTGATAG
AACTCTGCACTAAACCCATCTGGTCCTGGGCTTTTTTTGGTTGGGAGACT
ATTAATGACTGCTTCTATTTCTTTAGGGGATATGGGACTGTTTAGATCAT
TAACTTGATCCTGATATAACTTTGGTACCTGGTATCTGTCTAGAAATTTG
TCCATTTCGTCCAGGTTTTCCAGGTTTGTTGAGTATAGCCTTTTGTATAA
GGATGTGTTGGTGTTTTTGTATCTCCTCCCGAATTTTTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no296_j11.b1 MSMg01no296_j11.b1 CHROMAT_FILE:
MSMg01no296_j11.b1 PHD_FILE: MSMg01no296_j11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:32:49 2005
         (317 letters)



>mm_chr13_9991689_9992405
          Length = 717

 Score =  600 bits (310), Expect = e-176
 Identities = 313/314 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctgggagcaatctcattttcagagagaatttttcctcaaggtggctggtagtgg 63
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 517 ggaattctgggagcaatctcgttttcagagagaatttttcctcaaggtggctggtagtgg 458

                                                                       
Query: 64  tatgaattcaggcagtttggataaagctatccccatatggcacaagggctctatgaagtg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 tatgaattcaggcagtttggataaagctatccccatatggcacaagggctctatgaagtg 398

                                                                       
Query: 124 cagatggaggcttggcaatcagtactaatcagaagctgtgtagaagattgaaagaagctg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 cagatggaggcttggcaatcagtactaatcagaagctgtgtagaagattgaaagaagctg 338

                                                                       
Query: 184 gcaaaggctggagaaagcaaaaaagtatcaaatctcataagccaagaaaaaaaagagtgt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 gcaaaggctggagaaagcaaaaaagtatcaaatctcataagccaagaaaaaaaagagtgt 278

                                                                       
Query: 244 cgattcttgagaaagtcagaataagaagcactaagagtggcaaattccaaggacctcagg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 cgattcttgagaaagtcagaataagaagcactaagagtggcaaattccaaggacctcagg 218

                         
Query: 304 tagttcaaagaggt 317
           ||||||||||||||
Sbjct: 217 tagttcaaagaggt 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)