Query= MSMg01no296_k17.b1 MSMg01no296_k17.b1 CHROMAT_FILE:
MSMg01no296_k17.b1 PHD_FILE: MSMg01no296_k17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:32:55 2005
(290 letters)
>mm_chr13_41712683_41713372
Length = 690
Score = 549 bits (284), Expect = e-161
Identities = 287/288 (99%)
Strand = Plus / Plus
Query: 1 actaaaggtatttggcttggtggcccttcttatctgtgttacaactattccgtctaccat 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 actaaaggtatttggcttggtggcccttcttatctgtgttacaactattctgtctaccat 260
Query: 61 agtagtatgatagcatccatggatggtctgagcatactagctggtattcatgtagaattt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtagtatgatagcatccatggatggtctgagcatactagctggtattcatgtagaattt 320
Query: 121 gttatgaaattttgctttttatatatttaaaaatcttctttaactgtacaatcattttta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttatgaaattttgctttttatatatttaaaaatcttctttaactgtacaatcattttta 380
Query: 181 gccagagattgttcagaaacaatgcagagcagacatgactcctaggctgtatgtatttat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gccagagattgttcagaaacaatgcagagcagacatgactcctaggctgtatgtatttat 440
Query: 241 tggcccaaatctagggggccttaccaaattatgaatgtaatgtatccc 288
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggcccaaatctagggggccttaccaaattatgaatgtaatgtatccc 488
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space: 191361
Effective search space used: 191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no296_k17.g1 MSMg01no296_k17.g1 CHROMAT_FILE:
MSMg01no296_k17.g1 PHD_FILE: MSMg01no296_k17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:32:55 2005
(641 letters)
>mm_chr13_41712683_41713727
Length = 1045
Score = 1135 bits (587), Expect = 0.0
Identities = 626/647 (96%), Gaps = 16/647 (2%)
Strand = Plus / Plus
Query: 1 actaaaggtatttggcttggtggcccttcttatctgtgttacaactattctgtctaccat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actaaaggtatttggcttggtggcccttcttatctgtgttacaactattctgtctaccat 260
Query: 61 agtagtatgatagcatccatggatggtctgagcatactagctggtattcatgtagaattt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtagtatgatagcatccatggatggtctgagcatactagctggtattcatgtagaattt 320
Query: 121 gttatgaaattttgctttttatatatttaaaaatcttctttaactgtacaatcattttta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttatgaaattttgctttttatatatttaaaaatcttctttaactgtacaatcattttta 380
Query: 181 gccagagattgttcagaaacaatgcagagcagacatgactcctaggctgtatgtatttat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gccagagattgttcagaaacaatgcagagcagacatgactcctaggctgtatgtatttat 440
Query: 241 tggcccaaatctagggggccttaccaaattatgaatgtaatgtatcccataactcaatca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggcccaaatctagggggccttaccaaattatgaatgtaatgtatcccataactcaatca 500
Query: 301 atacaggatcagaagtttctgctgttagcaatgtagtgggcagcaaattctatatattnt 360
|||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |
Sbjct: 501 atacaggatcagaagtttctgctgttagcaatgtagtggg-agcaaattctgtatatt-t 558
Query: 361 cggttctctggaatgaaaaaaaaaataa------ctctacagtcacttttttttatcaca 414
||||||||||||||||||||||||| || |||||||||||| |||||||||||||
Sbjct: 559 cggttctctggaatgaaaaaaaaaaaaaaaccaactctacagtcacgtttttttatcaca 618
Query: 415 ttatttaaaaatattacatggactatttacatacagtagaaaattacaaacagttcccaa 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ttatttaaaaatattacatggactatttacatacagtagaaaattacaaacagttcccaa 678
Query: 475 acatagtcttttatgtgtgtttttcagcttgggggatagaatatgttgaatagtgggttt 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 acatagtcttttatgtgtgtttttcagcttgggggatagaatatgttgaatagtgggttt 738
Query: 535 ttacctgtttgctggtaactttatttcaaaggggtgtgtgtgtgtgtgtgtgtgtgtgtc 594
||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 739 ttacctgtttgctggtaactttatttcaaaggggtgtgtgtgtgtgtgtgt--------c 790
Query: 595 cgtgtccacatgtgtgtgtcagtgtccacatgtgtgcgtgttgaggg 641
|||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct: 791 cgtgtccacatgtgtgtgtccgtgtccacatgtgtgtgtgttgaggg 837
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1045
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1035
Effective search space: 653085
Effective search space used: 653085
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
