BAC Information

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BAC

Clone NameMSMg01-297I09
Chromosome13 (Build37)
Map Location 61,118,897 - 61,119,205
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041267, Gas1, EG328264, Dapk1, LOC218274, BC051665, 2310051M13Rik, 4930486L24Rik, Tpbpb, Ctla2a, Tpbpa, Ctsj
Downstream geneCtsq, Ctsr, Cts6, Cts8, Cts8-ps, LOC435362, Cts7, Cts7-ps, EG624056, LOC665717, Ctsm, Cts3, EG665401, LOC624140, EG623505, LOC665415, LOC673332, BC052688, EG638502, LOC100041382, EG633250
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-297I09.T7 (MSMg01no297_i09.b1)MSMg01-297I09.TJ (MSMg01no297_i09.g1)
ACCAG424829AG424830
length740756
length of high quality
(start - end)
309 (52 - 360)269 (74 - 342)
definitionCHROMAT_FILE: MSMg01no297_i09.b1 PHD_FILE: MSMg01no297_i09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:33:59 2005CHROMAT_FILE: MSMg01no297_i09.g1 PHD_FILE: MSMg01no297_i09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:33:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTACAATAAAGCGG
AATTCATACTGTAGTCTGACTTCCTTTCCTGATATCTAAAGGGATTTGCT
TTTTATTTTGCTGCCTTCCAATTGTATAAACTAATTCTTCAAACTCTAAC
ATATACCACTAAGAACCATCTTTAGCAAGATATGTGAGCTGTGGGGACAA
CATGGTCAGCATTTATGCAGATACTTGAGTGACCTTGTTTCTGGCAAACA
CAGGGACCCTAGGCTTGCAAAGATCTACAGATTTCATCTGTGTTAGTCAT
TCTGTGTCCTAGTGACCAATGATTCTGCACTTTAAGTCAGCTACTCTCTG
AGCCCCAAGAGATAGACAAAATCCAGATGAAAGAGTTAGTCAACAGGACA
TGAAGCCTTAGGCTAAAATAGTCCACCTCTCCTTCATCACATTTACCCAA
GTGCTCTCTGATAGACTTGAAGAGGACTTATAACCCCTTTCTCTCTCATT
CCTCTGCCATTCCTAACTACTTTAATTTATATATTTTCCTCATTGGTATG
GCCTCTATCTTTATATACCTGCAGCAGTGAAAACTATTCCAGTAGATATA
TGCCTTTCGTCCTATATTTTGTTATCACATTATCCACCAGAAACATCCCG
TTCCTTCTTATATATGAGACTAGGCATGCCGAAGTTTCCTGTTGTCTTCC
GATGACCACACTATTTGTTCTGAATTCCTTGGTATATATG
CCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCTGTTTAGCTCTGTATCCCACATTTA
ACCTAGGTTATTTGGTTTAGTGGACCCTACATTCTTGAGTTCTTTATATA
TTTTAGATACTAGTCCTCTGTCAGATGTAGCATTAGTGAAGAGCACTTTG
AAATCTGTTGGCATATATTTTGTCCTACTGACAGTGCCCTTTGTCTTACA
GAACACCTTTAATGAGGTCCTGTTTATCAAATGTTGATCTTACAGCCTGA
GCCATAGGATTTCTGTTCTTGAAGTTGTCTCCTGTACCAATGCATTCAAG
ACCATTTTCCACTTCCGCTCCTTTTTAGACATAGTGTATGCCTTTTTATG
TTGAGGTCCTTGATCCACTTGCACTTACATTGTGTGCACGGCGATAAATA
TGCCTCTATTTTACCTCTTCCAGTTATACAAGCACTATTGGTTGAAGATG
CTCTCCCTCTTCTATTGAATGTTTTTGGATTCTTCTCCCTCAATCGAGTG
TTCCTACGCGTGTGGGTTTATTCCCTGCTTCCTCCGATTTCTTCTTTCCT
GACTTACCCCGCCCTTTTTTTTATATTCCTTACCACGCTCCTTTTTTATC
ACCCACCTCCTCTGTAATTACTCCCTCGGCTGTTTTTGGAAGGGCCAATT
TCCCCTCTCAAGCCTCCTTTCCACTTGTTGCCATCCATCTGCCGCCCGCT
CTTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no297_i09.b1 MSMg01no297_i09.b1 CHROMAT_FILE:
MSMg01no297_i09.b1 PHD_FILE: MSMg01no297_i09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:33:59 2005
         (309 letters)



>mm_chr13_61118697_61119405
          Length = 709

 Score =  567 bits (293), Expect = e-166
 Identities = 305/309 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   attcatactgtagtctgacttcctttcctgatatctaaagggatttgctttttattttgc 60
           |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct: 201 attcatactgtagtctgaattcctttactgatatctaaagggatttgctttttattttgc 260

                                                                       
Query: 61  tgccttccaattgtataaactaattcttcaaactctaacatataccactaagaaccatct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgccttccaattgtataaactaattcttcaaactctaacatataccactaagaaccatct 320

                                                                       
Query: 121 ttagcaagatatgtgagctgtggggacaacatggtcagcatttatgcagatacttgagtg 180
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttagcaagctatgtgagctgtggggacaacatggtcagcatttatgcagatacttgagtg 380

                                                                       
Query: 181 accttgtttctggcaaacacagggaccctaggcttgcaaagatctacagatttcatctgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 accttgtttctggcaaacacagggaccctaggcttgcaaagatctacagatttcatctgt 440

                                                                       
Query: 241 gttagtcattctgtgtcctagtgaccaatgattctgcactttaagtcagctactctctga 300
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 441 gttagtcattctgtgtcctagtgaccaatgattctggactttaagtcagctactctctga 500

                    
Query: 301 gccccaaga 309
           |||||||||
Sbjct: 501 gccccaaga 509


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 709
Length adjustment: 9
Effective length of query: 300
Effective length of database: 700
Effective search space:   210000
Effective search space used:   210000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)