BAC Information

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BAC

Clone NameMSMg01-297I20
Chromosome13 (Build37)
Map Location 67,141,163 - 67,141,489
singlet/doubletsinglet
Overlap geneZfp712
Upstream geneLOC100042434, LOC100041892, EG665974, LOC100041915, 2410141K09Rik, C330014B19Rik, Mzf6d, Vmn2r-ps106, LOC666027, LOC100042492, LOC100041947, EG382769, LOC666052, EG432768, LOC666061, Uqcrb, Mterfd1, Ptdss1
Downstream geneZfp708, Zfp759, Rsl1, LOC674699, Zfp455, Zfp458, Zfp457, A230042K10Rik, E130120F12Rik, Zfp456, 2810487A22Rik, Zfp459, C330011K17Rik, LOC666098, 9630025I21Rik, Zfp817, Zfp87, Zfp748, A530054K11Rik, LOC328277, 3830402I07Rik, EG666137, Zfp85-rs1, LOC674597, Zfp273, BC048507, LOC666185, LOC100042687, LOC100042692, LOC674779
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-297I20.T7 (MSMg01no297_i20.b1)MSMg01-297I20.TJ (MSMg01no297_i20.g1)
ACCAG424851AG424852
length725723
length of high quality
(start - end)
681 (45 - 725)610 (77 - 686)
definitionCHROMAT_FILE: MSMg01no297_i20.b1 PHD_FILE: MSMg01no297_i20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:34:01 2005CHROMAT_FILE: MSMg01no297_i20.g1 PHD_FILE: MSMg01no297_i20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:34:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACACTGTTACGAAACCATACAAATGCAAAGAATGTGGCAAGGCCTT
TAGATGTTCATCATATTTTAAGTATCATCAGAGACTTCATACTGGAGAGA
AACCCTACACATGCAAAGAATGTGGGAAAGCTTTTGCTAAATCTTCATGT
CTTATTTTACACCAAAGAATTCATACTGGGGAAAAACCCTACAAATGTGA
AGAGTGTGGCCAGGCATTTATCTGTTCTTCATACCTGAGGAAGCATCAGA
GGATCCATACTGGTGAGAAACCATACACATGTGAAGAATGTGGCAAAGCT
TTTAGCATTTATTCAACCTATGCTCAACACCAGAGAATTCATACGGGAGA
AAAACCTTATAAATGCAACGAATGTGATAAAGCATTTAATAATCACTCAG
CCCTAATTAAACATCAAAGAATTCATACTGGAGAGAAACCCTATGCATGC
AAAGAATGTAGTAAAGCTTTTAATAATAGCTCAAGCCTTATTCGACATCA
GCGAATTCACATTGGAATTGAAACCCTAGAAATTCAAGGAATTTGGCAGG
GCCTTTAGTAATAGTTCAGTGCTTAGCTCCAAAATTTCATGATAATGAAA
AGCTGTAGAAATGAGAAAGGTGACTAATTAATAAGTATTCTATACATATA
CAGTGTANAAAATCATGCATGAAAG
CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGCCA
GAGAAACACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTGAGATTCCACTTCACTCTAGTCAAAATGGCTAAGA
TCAAAAACTCAGGTGACAGCAGATGCTGGCCAGGGTGTGGAGAAAGGGGA
ACACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAA
ATCAGTCTGGCGGTTCCTCAGAAAATTGGACTTAGTACTAAAGTAATGTT
CTTAACCAAAGCAAACTCTTTTGAAATTCATATTTGGTTATATGTTAAAA
ATCAGATTTTCGGAGTATTCTGCTAGCATCCTTCAGAAGGCTCTTAGCTC
CTCCTGCATCATGCCTGTCTGGATGCTGCCATGTTTACACCTTGATAATG
GACTGAACTTCGGAACCTGTAAGCCAGCCCCAATTAAATGTTGTCCTTAT
AAGAGTTGCCTTTGTTATGGTGTCTGCTCACAGCAGAAAAACGCTAAGAC
AGATGGCACCAGGGACTGGGATATTGCTGTGATAGGCTTGACCATGTTTT
TGCTTGTAAGAATTAAGTTTGGGGAACTTTGGATTTGGAAACCATGGAAT
GTTTCAAGAGGGGCTTCATGGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no297_i20.b1 MSMg01no297_i20.b1 CHROMAT_FILE:
MSMg01no297_i20.b1 PHD_FILE: MSMg01no297_i20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:34:01 2005
         (681 letters)



>mm_chr13_67140409_67141489
          Length = 1081

 Score =  611 bits (316), Expect = e-179
 Identities = 324/327 (99%)
 Strand = Plus / Minus

                                                                        
Query: 355  gaaaaaccttataaatgcaacgaatgtgataaagcatttaataatcactcagccctaatt 414
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 1081 gaaaaaccttataaatgcaaggaatgtgataaagcatttaataatcactcagccctaatt 1022

                                                                        
Query: 415  aaacatcaaagaattcatactggagagaaaccctatgcatgcaaagaatgtagtaaagct 474
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1021 aaacatcaaagaattcatactggagagaaaccctatgcatgcaaagagtgtagtaaagct 962

                                                                        
Query: 475  tttaataatagctcaagccttattcgacatcagcgaattcacattggaattgaaacccta 534
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961  tttaataatagctcaagccttattcgacatcagcgaattcacattggaattgaaacccta 902

                                                                        
Query: 535  gaaattcaaggaatttggcagggcctttagtaatagttcagtgcttagctccaaaatttc 594
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901  gaaattcaaggaatttggcagggcctttagtaatagttcagtgcttagctccaaaatttc 842

                                                                        
Query: 595  atgataatgaaaagctgtagaaatgagaaaggtgactaattaataagtattctatacata 654
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841  atgataatgaaaagctgtagaaatgagaaaggtgactaattaataagtattctatacata 782

                                       
Query: 655  tacagtgtanaaaatcatgcatgaaag 681
            ||||||||| |||||||||||||||||
Sbjct: 781  tacagtgtaaaaaatcatgcatgaaag 755


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 681
Length of database: 1081
Length adjustment: 10
Effective length of query: 671
Effective length of database: 1071
Effective search space:   718641
Effective search space used:   718641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)