BAC Information

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BAC

Clone NameMSMg01-297J16
Chromosome13 (Build37)
Map Location 72,967,800 - 72,968,277
singlet/doubletsinglet
Overlap genenone
Upstream geneIrx1, LOC100042828, LOC100042832, LOC100042836, Irx2
Downstream geneLOC621486, Irx4, LOC100042864, Ndufs6, Mrpl36, Aytl2, Slc6a3, Clptm1l, Tert, Slc6a18, Slc6a19, Slc12a7, Nkd2, EG666360
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-297J16.T7 (MSMg01no297_j16.b1)MSMg01-297J16.TJ (MSMg01no297_j16.g1)
ACCAG424886AG424887
length736739
length of high quality
(start - end)		692 (45 - 736)480 (75 - 554)
definitionCHROMAT_FILE: MSMg01no297_j16.b1 PHD_FILE: MSMg01no297_j16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:34:05 2005CHROMAT_FILE: MSMg01no297_j16.g1 PHD_FILE: MSMg01no297_j16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:34:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTGATCTTTCCCAATTTTTATCATGAATGGGTGTTGAATCTTGTCA
AATGCTTTTTCTGCATCTAACGAGATGATCATGTGGTTTTTGTCTTTGAG
TTTGTTTATATAATGGATTACATTGATGGATTTTCGTATATTAAACCATC
CCTGCATCCCTGGAATAAAACCTACTTGGTCAGGATGGATGATTGCTTTA
ATGTGTTCTTGGATTCGGTTAGCGAGAATTTTATTAAGGATTTTTGCATT
GATATTCATAAGAGAAATTGGTCTGAAGTTCTCTATCTTTGTTGGATCTT
TCTGTGGTTTAGGTATCAGAGTAATAGTGGCTTCATAAAATGAGTTGGGT
AGAGTACCTTCTACTTCTATCTTGTGAAATAGTTTGTGCAGAACTGGAAT
TAGATCTTCTTTGAAGGTCTGATAGAACTCTGCACTAAACCCGTCTGGTC
CTGGGCTTTTTTTTTGGCTGGGAGACTATTAATAACTGCTTCTATTTCTT
TAGGGGATATGGGACTGTTTAGAAGGTCAACTTGATCCTGATTCAACTTT
GGTACCTGGTATCTGTCCAGAAATTTGTCCATTTCATCCAGGTTTTCCAG
TTTTGTTGAGTATAGCCTTTTGTAGAAGGATCTGATGGTGTTTTGGATTT
CTTCAGGATCTGTTGTTATTTCTCCCTTTTCATTTC

CGATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATTTTTGTGCCAGTAGTTTCTAGAGA
AGTTGAAACATGAGCTGTTCACTGAGGAATACGGAGTTTGACTACACAGT
GTGAGAGAGGAGAGTTGGCAGCCAGGAGCTAGCATGAGAGAACAGCCTCC
CCCACTCAGATACAGCTCCACAGATTCAGCAGCCTCCCAGCTCTCTTGGT
GGGATCACAGGTGATTTCTTTAGCACTCCCTGTGAAAACATGCTTTAAAA
TCCTATAAACAAGCTACTCATCTCAAACTCACTGAGATACATGAGAGCCT
CCGTGACCACTCTTGTCCCAGGAGCTCCTTTTAGCCACAGGACACCAGGC
TGAGCCAGTCAGACCTGAAGCTACATAGCTTGGGCCCTAGGTACTTTCCC
AGTGATTCCAGAGCCTTGAGAAAATGTACTGGTCTCCTCCTGACTTGCTG
CAGAGCTTGACTGCTGTCCCTCACTTGGCCTCTTTCTTGCCGCACCGTCA
CTGGTTCTGCCCTGAGTGCTTGGTGCTGTAACATCCTCCTGCAGCCTAGG
TTTTGGGAACACTCCACTCCTCTTGTGCCTCTCCGTTTATGGGTGCTTGC
TTTGTGGTACCTCAAATTGCATTTCCGGTTTTTTTCCCTTTCTTTTCACT
TCCTTCCTGGCAAGATGGCTTTTGAAGGAGNCCATGTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no297_j16.g1 MSMg01no297_j16.g1 CHROMAT_FILE:
MSMg01no297_j16.g1 PHD_FILE: MSMg01no297_j16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:34:05 2005
         (480 letters)



>mm_chr13_72967600_72968477
          Length = 878

 Score =  862 bits (446), Expect = 0.0
 Identities = 471/480 (98%), Gaps = 2/480 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttttgtgccagtagtttctagagaagttgaaacatgagctgttcactgaggaatacgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atttttgtgccagtagtttctagagaagttgaaacatgagctgttcactgaggaatacgg 260

                                                                       
Query: 61  agtttgactacacagtgtgagagaggagagttggcagccaggagctagcatgagagaaca 120
           ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||
Sbjct: 261 agtttgactacacagtgtgagagaggagagtcggcagccaggagctaccatgagagagca 320

                                                                       
Query: 121 gcctcccccactcagatacagctccacagattcagcagcctcccagctctcttggtggga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcctcccccactcagatacagctccacagattcagcagcctcccagctctcttggtggga 380

                                                                       
Query: 181 tcacaggtgatttctttagcactccctgtgaaaacatgctttaaaatcctataaacaagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcacaggtgatttctttagcactccctgtgaaaacatgctttaaaatcctataaacaagc 440

                                                                       
Query: 241 tactcatctcaaactcactgagatacatgagagcctccgtgaccactcttgtcccaggag 300
           |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 441 tactcatctcaaactcactga--tacatgagagcctccgtgaccactcttgtcccaggag 498

                                                                       
Query: 301 ctccttttagccacaggacaccaggctgagccagtcagacctgaagctacatagcttggg 360
           ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct: 499 ctcctattagccacaggacaccaggctgagccagtcagacctgaagctgcatagcttgag 558

                                                                       
Query: 361 ccctaggtactttcccagtgattccagagccttgagaaaatgtactggtctcctcctgac 420
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 559 ccctaggtactttcccagtgattccagagccttgagaaaatgtgctggtctcctcctgac 618

                                                                       
Query: 421 ttgctgcagagcttgactgctgtccctcacttggcctctttcttgccgcaccgtcactgg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ttgctgcagagcttgactgctgtccctcacttggcctctttcttgccgcaccgtcactgg 678


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 878
Length adjustment: 10
Effective length of query: 470
Effective length of database: 868
Effective search space:   407960
Effective search space used:   407960
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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