BAC Information

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BAC

Clone NameMSMg01-298B08
Chromosome13 (Build37)18 (Build37)
Map Location 3,371,745 - 3,372,33340,467,676 - 40,467,919
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC667375, LOC544917, LOC236294, Speer6-ps1, LOC674228, LOC667411, LOC100039182
Downstream gene2810429I04Rik, Gdi2, Asb13, Calml3, Calm4, Calm5, LOC100039279, Net1, Tubal3, Ucn3, Akr1c14, Akr1c18, LOC100039262, Akr1c13, Akr1c19, Akr1c12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-298B08.T7 (MSMg01no298_b08.b1)MSMg01-298B08.TJ (MSMg01no298_b08.g1)
ACCAG425232AG425233
length734733
length of high quality
(start - end)
607 (47 - 653)497 (77 - 573)
definitionCHROMAT_FILE: MSMg01no298_b08.b1 PHD_FILE: MSMg01no298_b08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:34:41 2005CHROMAT_FILE: MSMg01no298_b08.g1 PHD_FILE: MSMg01no298_b08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:34:41 2005
singlet/doubletsingletsinglet
BLAST hitpluralplural
Map location.(3,371,745 - 3,372,333)(40,467,676 - 40,467,919)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCTTAGGAACACGTCCTTGTTGTATACTTATCCTGCTCCCATTAA
TTGGGGTACTCTACTGTGGCAAGGGTACTTGCCATGTCTTAACTTGAAAA
CCAGAAAGTCAGTTGTGCATGTACAAGTCTCTTTCTTCCAAGTAAGATGT
CAGTTCCCAGGGAGGCCTCGAGAACTTATACTTTACTCACTCACACCCTA
CTCAAAATAGAAGTCTGGTTCGAAGTAGTCTCTGCACTGAATCGGTGGTG
CGGGTGTCTCTCTTTTGTTGGGGTGCGGGGGTCCGTCCCCAGGGCAGCTT
CTAAGAGCAAATGCCAGAAAAGTGTATACATGGGTTTGTGCAGGAAATGC
TGCTGGGTGGTCAGTTTGGGTCCAAGCCTATTGCAGATAACTATAGAACA
AAGGAAGCTTCTATTCTGATTGGTTTCCGAGGACACATCCAACAAGAATA
TGTAGTCAATTCTGGCAATAATGGCAGAAACAAGCTATGAGAAAGTGTCC
TTATAATAGTAGTTAACAGCACAAAATGGCAGGCTAGCCAGGTAAGAGGT
TACCTAGGCCTTATCTAATCTGAAGTAGGCCTTCACATTCCATCTAGGCC
TTAATATTTTACCTATACCTTAACAGCCAGCAGTTTTGCCCTCTGAGCCA
TCGCACATGCATGTTCAGATCAATGAATATCTTT
NCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTGAACTCACTGTCCTTTCAGGT
CCACATTTGCTCTGGCTCTGGCAACTGACTGAACCAAACAATTAGGCTCA
TACCTAGAACTTTGGAAATGGTAATGGAGTTGATAACACACCCTAACAGA
AAGAGGAATGCTCCACTCACTAGTACACTTTCACTAGAAGCCTCACCCTG
TCAGCAGTTTAGGAATTTGTAAAGCCAATCTGGACAATATTTAAATGGTT
TGGAATTTCTACTTCATGTTTTTTTTTTTTTTTTTTAGAGACAGGGTTTC
TCTGTATAGCCCTGGCTGTCCTGGCACATTGGATTTTATAACAGACTTTG
TGTGTGTGTGTGTGTGTGCGTGTGTGTGTAATACTTCTCCTGTGATTGCC
GTAACTTGCAATCTAGTGGGCTTATGTTTGATTCCTGTAATCTTTTTTTC
TAATTCTTTTTCCTTTTTATATTTTATTTTATTTTATTTTATTTTATTTT
ATTTTATTTTATTTTATTTTATTTTATTTTACTTTGGCTTTTGAGACAGG
GTTTCTCTGAATAGCCCTGTCTGTCCTGGAATTCAGTTTGCAGACCAGGC
TGGCCTAAAACTCATAATTCCTCCCATTTCTGCCTCCCGAGTGTTGAAAT
TAAAGGTGCGTAACCCCTCCCCCGGTTTTTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no298_b08.b1 MSMg01no298_b08.b1 CHROMAT_FILE:
MSMg01no298_b08.b1 PHD_FILE: MSMg01no298_b08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:34:41 2005
         (607 letters)



>mm_chr13_3371527_3372533
          Length = 1007

 Score =  696 bits (360), Expect = 0.0
 Identities = 521/590 (88%), Gaps = 30/590 (5%)
 Strand = Plus / Plus

                                                                       
Query: 47  cccattaattggggtactctactgtggcaagggtacttgc-------------catgtct 93
           ||||||| |||| |||||  ||||||||| ||| ||||||             |||||||
Sbjct: 219 cccattagttggtgtactagactgtggcagggggacttgccttgtctaacattcatgtct 278

                                                                       
Query: 94  taacttgaaaaccagaaagtcagttgtgcatgtacaagtctctttcttccaagtaagatg 153
           |||||||  ||||||||||||| |||  || ||||||||||||| |||||||||||||||
Sbjct: 279 taacttgtgaaccagaaagtcacttgcccacgtacaagtctcttccttccaagtaagatg 338

                                                                       
Query: 154 tcagttcccagggaggcctcgagaacttatactttactcactcacaccctactcaaaata 213
           ||||||||  ||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 339 tcagttccgtgggaggccttgggaacttatactttactcactcacaccctactcaaaata 398

                                                                       
Query: 214 gaagtctgg-ttcgaagtagtctctgcactgaatcggtggtgcgggtgtctctcttttgt 272
           |||||| || ||| ||||||||| | ||||||||| |||||| |||||||||||||||||
Sbjct: 399 gaagtc-ggattccaagtagtctgtacactgaatcagtggtgtgggtgtctctcttttgt 457

                                                                       
Query: 273 tggggtgcgggg---gtccgtccccagggcagcttctaagagcaaatgccagaaaagtgt 329
           ||||| ||||||   |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 tggggggcggggggtgtccatccccagggcagcttctaagagcaaatgccagaaaagtgt 517

                                                                       
Query: 330 atacatgggtttgtgcaggaaatgctgctgggtggtcagtttgggtccaagcctattgca 389
           ||||||||||  ||||||||||| |||||||||||||||||||| ||||||| |||||||
Sbjct: 518 atacatgggtgggtgcaggaaatactgctgggtggtcagtttggatccaagcatattgca 577

                                                                       
Query: 390 gataactatagaacaaaggaagc--ttctat---------tc-tgattggtttccgagga 437
           |||||||||||||||||||||||  ||| ||         || |||||||||||||||||
Sbjct: 578 gataactatagaacaaaggaagcagttcgattggcctctctcgtgattggtttccgagga 637

                                                                       
Query: 438 cacatccaacaagaatatgtagtcaattctggcaataatggcagaaacaagctatgagaa 497
           |||||||||| |||||||||| |||||||||||| ||||||||||||| || ||||||||
Sbjct: 638 cacatccaacgagaatatgtaatcaattctggcagtaatggcagaaactagatatgagaa 697

                                                                       
Query: 498 agtgtccttataatagtagttaacagcacaaaatggcaggctagccaggtaagaggttac 557
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 698 agtgtccttataatagtagttaacagcaccaaatggcaggctagccaggtaagaggttac 757

                                                             
Query: 558 ctaggccttatctaatctgaagtaggccttcacattccatctaggcctta 607
           |||| ||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct: 758 ctagcccttatctaatctgacgtaagccttcacattccatctaggcctta 807


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1007
Length adjustment: 10
Effective length of query: 597
Effective length of database: 997
Effective search space:   595209
Effective search space used:   595209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no298_b08.g1 MSMg01no298_b08.g1 CHROMAT_FILE:
MSMg01no298_b08.g1 PHD_FILE: MSMg01no298_b08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:34:41 2005
         (497 letters)



>mm_chr18_40467476_40468371
          Length = 896

 Score =  366 bits (189), Expect = e-105
 Identities = 231/245 (94%), Gaps = 1/245 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgaactcactgtcctttcaggtccacatttgctctggctctggcaactgactgaacca 60
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 444 tctgaactcactgtcctttcaggtccacctttgctctggctctggcaactgactgaacca 385

                                                                       
Query: 61  aacaattaggctcatacctagaactttggaaatggtaatggagttgataacacaccctaa 120
           ||||| |||||||||||||||| ||| | |||||||||||||||||| ||||||| ||||
Sbjct: 384 aacaa-taggctcatacctagatcttcgaaaatggtaatggagttgaaaacacactctaa 326

                                                                       
Query: 121 cagaaagaggaatgctccactcactagtacactttcactagaagcctcaccctgtcagca 180
           |||||||||||| |||||||||||||| | |||||||||||||||||| ||||| |||||
Sbjct: 325 cagaaagaggaaggctccactcactagaagactttcactagaagcctcgccctgccagca 266

                                                                       
Query: 181 gtttaggaatttgtaaagccaatctggacaatatttaaatggtttggaatttctacttca 240
           ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 265 gtttaggaatttgtaaagccaatctggacaatatttacatgatttggaatttctacttca 206

                
Query: 241 tgttt 245
           |||||
Sbjct: 205 tgttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 896
Length adjustment: 10
Effective length of query: 487
Effective length of database: 886
Effective search space:   431482
Effective search space used:   431482
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)