Query= MSMg01no298_f17.b1 MSMg01no298_f17.b1 CHROMAT_FILE:
MSMg01no298_f17.b1 PHD_FILE: MSMg01no298_f17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:01 2005
(456 letters)
>mm_chr13_39041097_39041952
Length = 856
Score = 832 bits (430), Expect = 0.0
Identities = 448/454 (98%)
Strand = Plus / Plus
Query: 1 tgaaatggcaaagtgtcagatgagacttcaagagtgtattagtcaaaataataagtgacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgaaatggcaaagtgtcagatgagacttcaagagtgtattagtcaaaataataagtgacc 260
Query: 61 ttaaagaatatgcaaacaagctgtaggacaaaaaacaggacttgtaataaagtcagcaat 120
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 261 ttaaagaatatgcaaacaagctgtaggacaaaaaacaggacttggaatgaagtcagcaat 320
Query: 121 gtaaaaaaaaattgaaaaaaagtgtgcatgtgtgtgtgtgagagagagactgactctcag 180
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 321 gtaaaaaaaaattgaaaaaaagtgtgcatgtgtgtgtgagagagagagactgactctcag 380
Query: 181 taatatgaatgaaaaatatgggtaagggggaaaatcaataaggaaattgaggttttgaaa 240
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taatatggatgaaaaatatgggtaagggggaaaatcaataaggaaattgaggttttgaaa 440
Query: 241 aaaagaaacttggaattaaactcaatgaatcaaataaagaaacagtggaaagcattgcca 300
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 441 aaaagaaacttggaaataaactcaatgaatcaaataaagaaacagtggaaaacattgcca 500
Query: 301 agaaatctgaccaagaggaagaaagagtttcagggctggagagcacaaaagacaaaccct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agaaatctgaccaagaggaagaaagagtttcagggctggagagcacaaaagacaaaccct 560
Query: 361 gcattccaatacccataaagaaaacaataaagggtttttaccttgaagcccaagaactct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcattccaatacccataaagaaaacaataaagggtttttaccttgaagcccaagaactct 620
Query: 421 gcaatccaacctaagcaccgtgggtagaaactta 454
||||||||||||||||||||||||||||||||||
Sbjct: 621 gcaatccaacctaagcaccgtgggtagaaactta 654
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 856
Length adjustment: 10
Effective length of query: 446
Effective length of database: 846
Effective search space: 377316
Effective search space used: 377316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no298_f17.g1 MSMg01no298_f17.g1 CHROMAT_FILE:
MSMg01no298_f17.g1 PHD_FILE: MSMg01no298_f17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:01 2005
(523 letters)
>mm_chr13_39206258_39207180
Length = 923
Score = 899 bits (465), Expect = 0.0
Identities = 495/507 (97%), Gaps = 6/507 (1%)
Strand = Plus / Minus
Query: 1 attcatttgctactgaaaggaagcagactccacgtaagataagcgtgtacaatctgtatt 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 502 attcatttgctactgaaaggaagcagactccacgtaagataagcgtgtagaatctgtatt 443
Query: 61 tgtaagatagtgagagaagaccatttattcactggtattctatataaatatgctaggcac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tgtaagatagtgagagaagaccatttattcactggtattctatataaatatgctaggcac 383
Query: 121 ttgctagaactaaggactgtcatctccacccctccagatggctagaaaatatgtttgatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ttgctagaactaaggactgtcatctccacccctccagatggctagaaaatatgtttgatg 323
Query: 181 ttactatcttgttgctgataaagaatgggaggctctgagtgacttggtggccatttttct 240
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ttaccatcttgttgctgataaagaatgggaggctctgagtgacttggtggccatttttct 263
Query: 241 aggattatgtacaagcctgtaagcaaagcttagagcttggtgaccacgagatatgcagtt 300
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 aggattatgcacaagcctgtaagcaaagcttagagcttggtgaccacgagatatgcagtt 203
Query: 301 cttatctatctatctatctatctatctatctatctatctatctatctatctatctattaa 360
|||||||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct: 202 cttatctatctatctatctatctatctatctatctatctatctatcgatctat----taa 147
Query: 361 ctcccaattcttacttctg-atcatcaagatggaaagttctagaatttagaaataccttt 419
|||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 ctcccaattcttacgt-tggatcatcaagatggaaagttctagaatttagaaataccttt 88
Query: 420 tggtatccttgttcatgacataggctgttctatagtaatttcttccttgctcttcttttt 479
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 87 tggtatccttgttcatgacataggctgttctatagtaatttcttccttgttcttcttttt 28
Query: 480 ctcctttcctcctcctcttcctgtacc 506
|||||||||||||||||||||||||||
Sbjct: 27 ctcctttcctcctcctcttcctgtacc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 923
Length adjustment: 10
Effective length of query: 513
Effective length of database: 913
Effective search space: 468369
Effective search space used: 468369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
